Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313D03f
(408 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 53 1e-07
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 51 3e-07
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 48 2e-06
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 48 4e-06
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 45 2e-05
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 40 6e-04
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 40 6e-04
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 39 0.001
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.001
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 39 0.002
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.002
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.002
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 37 0.007
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 37 0.007
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.010
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.010
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.010
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 36 0.013
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.017
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 35 0.029
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 34 0.052
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.052
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.052
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 33 0.12
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.21
SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6) 32 0.21
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.48
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.63
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 30 0.63
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 28 2.6
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 27 4.5
SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 27 7.8
SB_3721| Best HMM Match : RRM_1 (HMM E-Value=3.1) 27 7.8
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 52.8 bits (121), Expect = 1e-07
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 231
+F ++ GDL +V D SL R FA KYTS AK++ D S +KGYGFV F + ++ A
Sbjct: 216 DFRIFCGDLGSEVTDESLTRAFA-KYTSFLKAKIVRDKKSNKSKGYGFVSFKDPNDFIKA 274
Query: 232 LYAMN 246
+ MN
Sbjct: 275 MREMN 279
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 51.2 bits (117), Expect = 3e-07
Identities = 29/77 (37%), Positives = 46/77 (59%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
++++ +L +DD L F S Y +I +AKV+ D+ G +KG+GFV F + +E A+
Sbjct: 213 NLYIKNLDDPIDDERLREEF-SPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTE 271
Query: 241 MNGYCGLGTKPLKICTA 291
MNG L +KPL + A
Sbjct: 272 MNGRI-LISKPLYVALA 287
Score = 42.3 bits (95), Expect = 1e-04
Identities = 23/81 (28%), Positives = 41/81 (50%)
Frame = +1
Query: 7 LNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKG 186
++ R + Q ++ +V+V + D+DD + + A I + KV+ D G +KG
Sbjct: 92 MSKKERIEKMGTQPKKFTNVYVKNFGDDMDDEQMKEICAEA-GKIVSLKVMTDPEGKSKG 150
Query: 187 YGFVRFGNEDEQRNALYAMNG 249
+GFV F +E A+ +NG
Sbjct: 151 FGFVSFETPEEAEEAVNVLNG 171
Score = 31.9 bits (69), Expect = 0.21
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVF--ASKYTSIKTAKVILDNSGYTKGYGFVRF 204
S++VGDL+PDV + LY F A SI+ + ++ + GY +V F
Sbjct: 14 SLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRR--SLGYAYVNF 61
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 48.4 bits (110), Expect = 2e-06
Identities = 27/81 (33%), Positives = 40/81 (49%)
Frame = +1
Query: 22 RETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVR 201
+E + F VW+G LS DV + L +F +K+ +K ++ D SG ++ GFV
Sbjct: 512 QEVNEGFKMAASFPVWIGGLSEDVTENVLLELF-NKFGPVKDVVILRDESGKSRQSGFVH 570
Query: 202 FGNEDEQRNALYAMNGYCGLG 264
F + D A MNG LG
Sbjct: 571 FWSSDVAEAANVGMNGCDILG 591
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 47.6 bits (108), Expect = 4e-06
Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 237
++++G+L +VD+ LY F++ ++T K++ D+ +G +KG+ F+ F + D A+
Sbjct: 101 NLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIE 160
Query: 238 AMNGYCGLGTKPLKICTAVPK 300
AMNG L +P+ + A K
Sbjct: 161 AMNGQY-LCNRPITVSYAFKK 180
Score = 29.1 bits (62), Expect = 1.5
Identities = 18/80 (22%), Positives = 37/80 (46%)
Frame = +1
Query: 43 QHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQ 222
+ ++ +++VG L V + ++ +F + + +GYGFV F E++
Sbjct: 8 ERNQDATIYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDA 67
Query: 223 RNALYAMNGYCGLGTKPLKI 282
A+ MN G KP+++
Sbjct: 68 DYAIKVMNMIKVYG-KPIRV 86
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 45.2 bits (102), Expect = 2e-05
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 231
E+ ++G+LS VD+ +L F + KVI D +G +G+GFV FG+++E A
Sbjct: 4 EYRCYIGNLSYSVDEQALEEKFHG--CDVVDVKVITDRETGRPRGFGFVTFGSKEEMEKA 61
Query: 232 LYAMNGYCGLGTKPLKICTAVPK 300
+ +G +P+K+ A P+
Sbjct: 62 IDEFDGQ-DFDGRPMKVNQAQPR 83
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 41.5 bits (93), Expect = 3e-04
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234
+V+VG+L PDV DY L ++F S+Y SI KV D KGY F+ E ++ L
Sbjct: 616 TVYVGNLPPDVKDYELQQMF-SQYGSILETKVFAD-----KGYAFINARGEKRRQRCL 667
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 40.3 bits (90), Expect = 6e-04
Identities = 19/71 (26%), Positives = 39/71 (54%)
Frame = +1
Query: 22 RETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVR 201
+E ++ + + ++++ D PD+ SL VF Y +I+ +I +G +KG+G+V
Sbjct: 51 QELLSHKEEHDQRTIYIRDFRPDIRKSSLESVFGP-YGAIEDLSIIRTQTGKSKGFGYVT 109
Query: 202 FGNEDEQRNAL 234
+ N + + AL
Sbjct: 110 YENAESAQRAL 120
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 40.3 bits (90), Expect = 6e-04
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 240
++VG L ++ + + VF + ++ + ++I D+ + +KGYGFV+F + + A+
Sbjct: 244 LYVGSLHFNITEAMVKAVF-EPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQ 302
Query: 241 MNGYCGLGTKPLKI 282
MNG+ L +PLKI
Sbjct: 303 MNGF-ELAGRPLKI 315
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 39.1 bits (87), Expect = 0.001
Identities = 22/83 (26%), Positives = 44/83 (53%)
Frame = +1
Query: 52 REFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNA 231
R V+VG + D+ + L VF + I ++++D +G +GY FV + ++D+ +
Sbjct: 72 RGCEVFVGKIPRDLYEDELVPVFETA-GPIYEVRLMMDFNGQNRGYAFVVYTSKDDAKRC 130
Query: 232 LYAMNGYCGLGTKPLKICTAVPK 300
+ +N Y K + +C++V K
Sbjct: 131 VKTLNNYEIRKGKCIGVCSSVDK 153
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 39.1 bits (87), Expect = 0.001
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 145 TAKVILDN-SGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 300
+ KVI D +G +G+GFV FG+EDE A+ +G L +P+K+ A P+
Sbjct: 37 SVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGE-DLDGRPMKVNKAQPR 88
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 38.7 bits (86), Expect = 0.002
Identities = 28/85 (32%), Positives = 47/85 (55%)
Frame = +1
Query: 49 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRN 228
+ E SV++G+LS D D+ +L F K S T +VI G ++G+G+ F ++++
Sbjct: 177 KEEMSVFLGNLSFDADEETLAAFFEEKGLS-ATCRVI-TQEGRSRGFGYADFTSKEDYNK 234
Query: 229 ALYAMNGYCGLGTKPLKICTAVPKP 303
AL +NG G + ++I A KP
Sbjct: 235 AL-ELNGEDCCG-REIRINPANSKP 257
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 38.7 bits (86), Expect = 0.002
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 237
++++ L + D L + F + ++ +AKV +D + +K +GFV + N +NA+
Sbjct: 278 NLFIYHLPQEFTDADLMQTF-QPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQ 336
Query: 238 AMNGYCGLGTKPLKICTAVPK 300
MNG+ +G K LK+ PK
Sbjct: 337 HMNGF-QIGAKRLKVQLKRPK 356
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 38.3 bits (85), Expect = 0.002
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +1
Query: 49 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQR 225
E + ++ V + D+ D + +R+ S+ K++ SG++ G+GFV + ++ +
Sbjct: 44 ESKTTLIVNYIPQDMTDQT-FRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQ 102
Query: 226 NALYAMNGYCGLGTKPLKICTAVP 297
A+ +NG+ +G K LK+ + P
Sbjct: 103 KAIDKLNGFT-IGNKVLKVAFSRP 125
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 181 KGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLK 279
KG+ FV ++E +NA+ +NG+ KPL+
Sbjct: 316 KGFCFVTMATQEEAQNAIQTLNGFM-YTNKPLQ 347
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 38.3 bits (85), Expect = 0.002
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +1
Query: 19 SRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGF 195
+ E N + ++ + + P + + ++F + ++ + K+I D + G + GY F
Sbjct: 14 NHEPMENGTSDERTNLIINYVPPSMSQEDIKKIFGT-VGNVTSCKLIRDRATGQSLGYAF 72
Query: 196 VRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVP 297
V + N D+ A+ MNG L K LK+ A P
Sbjct: 73 VNYDNPDDANKAVREMNG-ARLQNKTLKVSFARP 105
Score = 33.5 bits (73), Expect = 0.068
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 243
++V L + LY++F S Y +I ++ LD KGYGFV N +E +A+ +
Sbjct: 274 IFVYGLPQEATPLFLYKLF-SPYGAITNIELKLD-----KGYGFVNMSNYEEACHAICCL 327
Query: 244 NG 249
NG
Sbjct: 328 NG 329
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 36.7 bits (81), Expect = 0.007
Identities = 25/89 (28%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Frame = +1
Query: 46 HEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQ 222
H+ + SV++G+L D+++ L +F + ++++ ++I D +G KG+G+V F ++D
Sbjct: 52 HDHQRSVFIGNLPFDIEEEPLRELFTT-CGNVESVRLIRDRKTGIGKGFGYVLFESKDAV 110
Query: 223 RNALYAMNGYCGLGTKPLKICTAVPKPKS 309
AL MN G K +++ + KP++
Sbjct: 111 VFAL-KMNNAEFKGRK-IRVFPSKDKPQT 137
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 36.7 bits (81), Expect = 0.007
Identities = 21/77 (27%), Positives = 40/77 (51%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
SV+VG++ + + L +F+ I V +G KGYGF + +++ +A+
Sbjct: 26 SVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRN 85
Query: 241 MNGYCGLGTKPLKICTA 291
+NGY L + L++ +A
Sbjct: 86 LNGY-ELNGRALRVDSA 101
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 36.3 bits (80), Expect = 0.010
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +1
Query: 130 YTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 300
+ ++ +AKV +D + +K +GFV + N +NA+ MNG+ +G K LK+ PK
Sbjct: 285 FGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGF-QIGAKRLKVQLKRPK 341
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 36.3 bits (80), Expect = 0.010
Identities = 20/83 (24%), Positives = 43/83 (51%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 243
+++ + PD+ + + VF + + + +G KGYGF+ + N+ +A+ +M
Sbjct: 201 IYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASM 260
Query: 244 NGYCGLGTKPLKICTAVPKPKSN 312
N + LG + L++ A+ P S+
Sbjct: 261 NLF-DLGGQFLRVGRAITPPTSS 282
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 36.3 bits (80), Expect = 0.010
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 240
++V ++ + + ++ +F S Y IK V LD +G+ KGY V + E ++AL A
Sbjct: 295 LFVTNIHEEAQEDDIHELF-SDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEA 353
Query: 241 MNGYCGLG 264
+NG LG
Sbjct: 354 LNGAEMLG 361
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 35.9 bits (79), Expect = 0.013
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +1
Query: 130 YTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPK 306
+ + + +I D +G +G+GFV FG+++E A+ +G L +P+K+ A P+
Sbjct: 119 FVASEAVNIITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQ-DLDGRPMKVNEAKPRGD 177
Query: 307 S 309
S
Sbjct: 178 S 178
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 35.5 bits (78), Expect = 0.017
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 240
V++G + D + L VF + I ++++D SG TKG+ F F N+DE +NA+
Sbjct: 154 VFIGKVPRDCFEDELIPVF-EECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVKK 212
Query: 241 MNGYCGLGTKPLKICTAV 294
++ K L +C +V
Sbjct: 213 LDNKEIRPGKRLGVCISV 230
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 34.7 bits (76), Expect = 0.029
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 112 RVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNED 216
R F +Y +K +K++ D G +KGY F+ F +++
Sbjct: 25 RAFFEEYGVVKESKIVRDKHGVSKGYAFITFESQE 59
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 33.9 bits (74), Expect = 0.052
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234
+++VG L P + +++ F++ ++ K I SG +KG+ FVR ++ + L
Sbjct: 43 TIFVGSLHPSTVESTIFEYFSTLGEQVEHVKCIRTLSGKSKGFAFVRLRKKEAVESVL 100
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 33.9 bits (74), Expect = 0.052
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234
SV+VG L+ D+ L F ++ +++ +++ GY++ YGFV F ++ + L
Sbjct: 81 SVFVGGLASGTDEEGLKDYF-EQFGEVESVRIMRTFLGYSRNYGFVLFKDDGPSKEVL 137
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 33.9 bits (74), Expect = 0.052
Identities = 15/62 (24%), Positives = 34/62 (54%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+++V +L D + + +F SK+ +K +++ + +G KGYG+V + E A+
Sbjct: 172 TLFVSNLPFDAKESEIEELF-SKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLT 230
Query: 241 MN 246
++
Sbjct: 231 LD 232
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 32.7 bits (71), Expect = 0.12
Identities = 17/80 (21%), Positives = 38/80 (47%)
Frame = +1
Query: 7 LNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKG 186
+N + A Q + ++++ +L + D+ L +F SKY + + +++ D +KG
Sbjct: 162 VNKGIQAQMAKQQEQDPTNLYIQNLPQNCDEAMLENMF-SKYGKVISTRILRDKDTNSKG 220
Query: 187 YGFVRFGNEDEQRNALYAMN 246
GF R + ++ + N
Sbjct: 221 VGFARMESAEKCEQVIKDFN 240
Score = 32.3 bits (70), Expect = 0.16
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALY 237
++++ L + D L R+ KY +I + K ILD ++ KGYGFV F + + A+
Sbjct: 101 NLYIRGLKANTTDDDLVRL-CHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVA 159
Query: 238 AM 243
A+
Sbjct: 160 AL 161
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 31.9 bits (69), Expect = 0.21
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Frame = +1
Query: 70 VGDLS----PDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNAL 234
VGDL P S + + +++ I +V LD N+ ++G+GFVRF +++ +N L
Sbjct: 114 VGDLIVLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVL 173
Query: 235 YAMNGYCGLGTKPLKIC-TAVPKPKSNL 315
+ G ++C +P+PK L
Sbjct: 174 STSHRIQG------RLCEVRLPRPKEEL 195
>SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)
Length = 349
Score = 31.9 bits (69), Expect = 0.21
Identities = 12/18 (66%), Positives = 17/18 (94%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSL 108
EFS++VGDL+PDV+D+ L
Sbjct: 116 EFSIFVGDLTPDVNDHML 133
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 30.7 bits (66), Expect = 0.48
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 124 SKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234
S++ ++ A V+ D G +KG+G V F ++ NA+
Sbjct: 147 SQFGDVERAVVVCDVRGRSKGHGIVEFSRKNNAHNAM 183
>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 30.3 bits (65), Expect = 0.63
Identities = 12/52 (23%), Positives = 29/52 (55%)
Frame = +1
Query: 94 DDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNG 249
+D L ++A++ + + +++ + GYT+G+GFV F + + + + G
Sbjct: 344 EDDVLQELYAAE-VAFRDVRIVRNKIGYTRGFGFVEFDTPEAAKEWMDYLKG 394
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 30.3 bits (65), Expect = 0.63
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 118 FASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLG 264
F Y K ++IL + GYGFV F D+ +A+Y NG LG
Sbjct: 22 FFYTYGRFKIREIILKD-----GYGFVEFDYSDDAEDAVYECNGKKMLG 65
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 237
+V+VG+L + + L++VF +Y + ++ D + ++G F+ F + +NA+
Sbjct: 11 TVYVGNLPYSLTNSDLHKVF-ERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVA 69
Query: 238 AMN 246
A+N
Sbjct: 70 AVN 72
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +1
Query: 178 TKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 300
++G+GFV F N ++ + A+ ++NG G + LKI ++ +
Sbjct: 98 SRGFGFVTFANPEDAQTAVKSLNGKEVQG-RTLKIAPSISR 137
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 28.7 bits (61), Expect = 1.9
Identities = 20/74 (27%), Positives = 33/74 (44%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+++VG+L + L R+ K+ + + G Y FV+F + D A A
Sbjct: 238 TLFVGNLETGISCQDL-RLSFEKFGVVLDVDIKRPARGQGNTYAFVKFADLDVAAKAKCA 296
Query: 241 MNGYCGLGTKPLKI 282
M G C +G +KI
Sbjct: 297 MQGQC-IGRNHIKI 309
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 240
++V L+P D L +F S++ +I + +VI D +G + Y F+ F +++ A +
Sbjct: 122 LFVCKLNPVTTDEDLEIIF-SRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERAYFK 180
Query: 241 MN 246
M+
Sbjct: 181 MD 182
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 27.5 bits (58), Expect = 4.5
Identities = 23/80 (28%), Positives = 39/80 (48%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
S++V ++ + + L VF +KY I+ + I D YGFV F + A+
Sbjct: 3 SIYVRNVPLPMSETQLKAVF-TKYGQIEKVRKIRD-------YGFVYFAKRESAVQAIDG 54
Query: 241 MNGYCGLGTKPLKICTAVPK 300
+NG G K L++ A+P+
Sbjct: 55 INGAYIDGCK-LEVSLAIPQ 73
>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 112 RVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNGY 252
+VF SK+ I T ++ T+GY F+ F N + A+ NGY
Sbjct: 96 KVF-SKFGQIVTEHYPMEKD-LTRGYIFLEFSNASDAVRAVKTANGY 140
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 181 KGYGFVRFGNEDEQRNALYAMNG 249
+GYGFV F + + +A++ +NG
Sbjct: 722 RGYGFVEFDDHRDAEDAVHDLNG 744
>SB_3721| Best HMM Match : RRM_1 (HMM E-Value=3.1)
Length = 51
Score = 26.6 bits (56), Expect = 7.8
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +1
Query: 169 SGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKS 309
+G +KGY +V F NE + AL AM+ G +P+ I V K K+
Sbjct: 2 AGRSKGYAYVEFNNESTVQAAL-AMDREKMEG-RPMFISPCVDKAKN 46
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.135 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,235,595
Number of Sequences: 59808
Number of extensions: 207427
Number of successful extensions: 383
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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