Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313D03f
(408 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 58 3e-09
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 57 4e-09
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 57 4e-09
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 57 4e-09
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 57 4e-09
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 54 3e-08
Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical pr... 54 3e-08
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 54 4e-08
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 54 4e-08
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 54 4e-08
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 52 1e-07
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 51 3e-07
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 50 9e-07
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 50 9e-07
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 49 1e-06
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 49 1e-06
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 47 5e-06
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 43 7e-05
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 43 7e-05
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 43 7e-05
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 43 7e-05
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 43 7e-05
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 42 1e-04
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 40 0.001
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 40 0.001
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 37 0.006
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 37 0.006
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 36 0.009
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 36 0.009
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 36 0.009
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 36 0.009
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 35 0.020
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 35 0.026
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 33 0.060
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 33 0.079
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z78536-2|CAB01716.1| 363|Caenorhabditis elegans Hypothetical pr... 27 3.9
U80452-12|AAB37851.1| 195|Caenorhabditis elegans Hypothetical p... 27 3.9
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 27 3.9
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 27 3.9
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 27 6.9
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 27 6.9
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 27 6.9
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 27 6.9
Z92790-5|CAI79208.1| 169|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 26 9.1
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 57.6 bits (133), Expect = 3e-09
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Frame = +1
Query: 25 ETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVR 201
E R+ + R F V+VGDL ++D L F K+ + AK+I DN+ KGYGFV
Sbjct: 121 ENRSKPETSRHFHVFVGDLCSEIDSTKLREAFV-KFGEVSEAKIIRDNNTNKGKGYGFVS 179
Query: 202 FGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKP 303
+ ++ A+ MNG LG + ++ A KP
Sbjct: 180 YPRREDAERAIDEMNG-AWLGRRTIRTNWATRKP 212
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 57.2 bits (132), Expect = 4e-09
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Frame = +1
Query: 25 ETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVR 201
+ ++ + R F V+VGDLS +VD+ L F + + AKVI D N+ +KGYGFV
Sbjct: 11 QQQSKIDTTRHFHVFVGDLSSEVDNQKLREAF-QPFGDVSDAKVIRDTNTTKSKGYGFVS 69
Query: 202 FGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKP 303
+ +E A+ MNG LG + ++ A KP
Sbjct: 70 YPKREEAERAIEQMNGQ-WLGRRTIRTNWATRKP 102
Score = 28.3 bits (60), Expect = 2.3
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFAS--KYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234
SV+VG+++ +D + + FAS + T ++ K+ +GY FV+F N+D A+
Sbjct: 129 SVYVGNIASLTED-EIRQGFASFGRITEVRIFKM--------QGYAFVKFDNKDAAAKAI 179
Query: 235 YAMN 246
MN
Sbjct: 180 VQMN 183
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 57.2 bits (132), Expect = 4e-09
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Frame = +1
Query: 25 ETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVR 201
+ ++ + R F V+VGDLS +VD+ L F + + AKVI D N+ +KGYGFV
Sbjct: 21 QQQSKIDTTRHFHVFVGDLSSEVDNQKLREAF-QPFGDVSDAKVIRDTNTTKSKGYGFVS 79
Query: 202 FGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKP 303
+ +E A+ MNG LG + ++ A KP
Sbjct: 80 YPKREEAERAIEQMNGQ-WLGRRTIRTNWATRKP 112
Score = 28.3 bits (60), Expect = 2.3
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFAS--KYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234
SV+VG+++ +D + + FAS + T ++ K+ +GY FV+F N+D A+
Sbjct: 139 SVYVGNIASLTED-EIRQGFASFGRITEVRIFKM--------QGYAFVKFDNKDAAAKAI 189
Query: 235 YAMN 246
MN
Sbjct: 190 VQMN 193
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 57.2 bits (132), Expect = 4e-09
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Frame = +1
Query: 25 ETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVR 201
+ ++ + R F V+VGDLS +VD+ L F + + AKVI D N+ +KGYGFV
Sbjct: 124 QQQSKIDTTRHFHVFVGDLSSEVDNQKLREAF-QPFGDVSDAKVIRDTNTTKSKGYGFVS 182
Query: 202 FGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKP 303
+ +E A+ MNG LG + ++ A KP
Sbjct: 183 YPKREEAERAIEQMNGQ-WLGRRTIRTNWATRKP 215
Score = 28.3 bits (60), Expect = 2.3
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFAS--KYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234
SV+VG+++ +D + + FAS + T ++ K+ +GY FV+F N+D A+
Sbjct: 242 SVYVGNIASLTED-EIRQGFASFGRITEVRIFKM--------QGYAFVKFDNKDAAAKAI 292
Query: 235 YAMN 246
MN
Sbjct: 293 VQMN 296
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 57.2 bits (132), Expect = 4e-09
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Frame = +1
Query: 25 ETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVR 201
+ ++ + R F V+VGDLS +VD+ L F + + AKVI D N+ +KGYGFV
Sbjct: 92 QQQSKIDTTRHFHVFVGDLSSEVDNQKLREAF-QPFGDVSDAKVIRDTNTTKSKGYGFVS 150
Query: 202 FGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKP 303
+ +E A+ MNG LG + ++ A KP
Sbjct: 151 YPKREEAERAIEQMNGQ-WLGRRTIRTNWATRKP 183
Score = 28.3 bits (60), Expect = 2.3
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFAS--KYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234
SV+VG+++ +D + + FAS + T ++ K+ +GY FV+F N+D A+
Sbjct: 210 SVYVGNIASLTED-EIRQGFASFGRITEVRIFKM--------QGYAFVKFDNKDAAAKAI 260
Query: 235 YAMN 246
MN
Sbjct: 261 VQMN 264
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 54.4 bits (125), Expect = 3e-08
Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +1
Query: 52 REFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRN 228
+ F V+VGDLS DV + L F +K+ + AKVI D + +KGYGFV F N+ N
Sbjct: 133 KHFHVFVGDLSKDVSNELLKSTF-TKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAEN 191
Query: 229 ALYAMNG 249
A+ MNG
Sbjct: 192 AIAGMNG 198
Score = 29.9 bits (64), Expect = 0.74
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
SV+VG++S D L +F S Y I ++ T+ Y FVR+ ++ A+
Sbjct: 238 SVYVGNISQQTTDADLRDLF-STYGDIAEVRIFK-----TQRYAFVRYEKKECATKAIME 291
Query: 241 MNG 249
MNG
Sbjct: 292 MNG 294
>Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical
protein T07F10.3 protein.
Length = 371
Score = 54.4 bits (125), Expect = 3e-08
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234
EF++ V + D+ D LYR+F KY S + AK+ G +KG GFVRFGN+ +Q+ AL
Sbjct: 155 EFNLHVSSVPDDMADAELYRIF-DKYQSCRGAKMFRFVDGSSKGSGFVRFGNQTDQQMAL 213
Query: 235 YAMN 246
M+
Sbjct: 214 VEMH 217
Score = 39.1 bits (87), Expect = 0.001
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFAS-KYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALY 237
++W+GD+ D + +L +VF + K +V + + KGY F+ F DE R LY
Sbjct: 69 TLWIGDVPTDWTEETLSQVFTECGHAPYKVKRVYVKDE--LKGYCFIEFITFDEARQTLY 126
Query: 238 AMNG 249
+NG
Sbjct: 127 DLNG 130
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 54.0 bits (124), Expect = 4e-08
Identities = 25/70 (35%), Positives = 43/70 (61%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
++++ +L +D+ S+Y F S + +I + KV +D G++KGYGFV F E+ +NA+
Sbjct: 121 NIFIKNLDKVIDNKSIYDTF-SLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQK 179
Query: 241 MNGYCGLGTK 270
+NG G K
Sbjct: 180 VNGMLLAGKK 189
Score = 49.6 bits (113), Expect = 9e-07
Identities = 30/81 (37%), Positives = 48/81 (59%)
Frame = +1
Query: 40 MQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDE 219
MQ + +++V +L VDD L + F S Y +I +AKV+ D +G +KG+GFV F +E
Sbjct: 311 MQKYQGVNLYVKNLDETVDDDGLKKQFES-YGNITSAKVMTDENGRSKGFGFVCFEKPEE 369
Query: 220 QRNALYAMNGYCGLGTKPLKI 282
+A+ MN + +KPL +
Sbjct: 370 ATSAVTEMNSKM-VCSKPLYV 389
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 237
S++VGDL PDV++ L+ F S + + +V DN + + GY +V F + A+
Sbjct: 33 SLYVGDLHPDVNESILFEKF-SAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMD 91
Query: 238 AMNGYCGLGTKPLKI 282
MN + L KP++I
Sbjct: 92 TMN-FEALHGKPMRI 105
Score = 38.3 bits (85), Expect = 0.002
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+V+V + + +L +VFA K+ +I + +V + G +KG+GFV F N +E A+ A
Sbjct: 214 NVYVKNFGDHYNKETLEKVFA-KFGNITSCEV-MTVEGKSKGFGFVAFANPEEAETAVQA 271
Query: 241 MNGYCGLGTK-PLKICTAVPK 300
++ GT L +C A K
Sbjct: 272 LHDSTIEGTDLKLHVCRAQKK 292
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 54.0 bits (124), Expect = 4e-08
Identities = 25/70 (35%), Positives = 43/70 (61%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
++++ +L +D+ S+Y F S + +I + KV +D G++KGYGFV F E+ +NA+
Sbjct: 58 NIFIKNLDKVIDNKSIYDTF-SLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQK 116
Query: 241 MNGYCGLGTK 270
+NG G K
Sbjct: 117 VNGMLLAGKK 126
Score = 51.2 bits (117), Expect = 3e-07
Identities = 32/87 (36%), Positives = 50/87 (57%)
Frame = +1
Query: 40 MQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDE 219
MQ + +++V +L VDD L + F S Y +I +AKV+ D +G +KG+GFV F +E
Sbjct: 248 MQKYQGVNLYVKNLDETVDDDGLKKQFES-YGNITSAKVMTDENGRSKGFGFVCFEKPEE 306
Query: 220 QRNALYAMNGYCGLGTKPLKICTAVPK 300
+A+ MN + +KPL + A K
Sbjct: 307 ATSAVTEMNSKM-VCSKPLYVAIAQRK 332
Score = 37.1 bits (82), Expect = 0.005
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+V+V + + +L ++FA K+ +I + +V + G +KG+GFV F N +E A+ A
Sbjct: 151 NVYVKNFGDHYNKETLEKLFA-KFGNITSCEV-MTVEGKSKGFGFVAFANPEEAETAVQA 208
Query: 241 MNGYCGLGTK-PLKICTAVPK 300
++ GT L +C A K
Sbjct: 209 LHDSTIEGTDLKLHVCRAQKK 229
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 54.0 bits (124), Expect = 4e-08
Identities = 25/70 (35%), Positives = 43/70 (61%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
++++ +L +D+ S+Y F S + +I + KV +D G++KGYGFV F E+ +NA+
Sbjct: 121 NIFIKNLDKVIDNKSIYDTF-SLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQK 179
Query: 241 MNGYCGLGTK 270
+NG G K
Sbjct: 180 VNGMLLAGKK 189
Score = 51.2 bits (117), Expect = 3e-07
Identities = 32/87 (36%), Positives = 50/87 (57%)
Frame = +1
Query: 40 MQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDE 219
MQ + +++V +L VDD L + F S Y +I +AKV+ D +G +KG+GFV F +E
Sbjct: 311 MQKYQGVNLYVKNLDETVDDDGLKKQFES-YGNITSAKVMTDENGRSKGFGFVCFEKPEE 369
Query: 220 QRNALYAMNGYCGLGTKPLKICTAVPK 300
+A+ MN + +KPL + A K
Sbjct: 370 ATSAVTEMNSKM-VCSKPLYVAIAQRK 395
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 237
S++VGDL PDV++ L+ F S + + +V DN + + GY +V F + A+
Sbjct: 33 SLYVGDLHPDVNESILFEKF-SAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMD 91
Query: 238 AMNGYCGLGTKPLKI 282
MN + L KP++I
Sbjct: 92 TMN-FEALHGKPMRI 105
Score = 37.1 bits (82), Expect = 0.005
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+V+V + + +L ++FA K+ +I + +V + G +KG+GFV F N +E A+ A
Sbjct: 214 NVYVKNFGDHYNKETLEKLFA-KFGNITSCEV-MTVEGKSKGFGFVAFANPEEAETAVQA 271
Query: 241 MNGYCGLGTK-PLKICTAVPK 300
++ GT L +C A K
Sbjct: 272 LHDSTIEGTDLKLHVCRAQKK 292
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 52.4 bits (120), Expect = 1e-07
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +1
Query: 49 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQR 225
E +F V+ GDL +V D L + F KY S + AKV+ ++ + +KGYGFV F + ++
Sbjct: 200 ENDFRVFCGDLGNEVSDELLAKAFR-KYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYV 258
Query: 226 NALYAMNGYCGLGTKPLKI 282
A+ M+G +G +P+K+
Sbjct: 259 RAMREMDGKY-VGNRPIKL 276
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 51.2 bits (117), Expect = 3e-07
Identities = 32/87 (36%), Positives = 50/87 (57%)
Frame = +1
Query: 40 MQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDE 219
MQ + +++V +L VDD L + F S Y +I +AKV+ D +G +KG+GFV F +E
Sbjct: 251 MQKYQGVNLYVKNLDETVDDDGLKKQFES-YGNITSAKVMTDENGRSKGFGFVCFEKPEE 309
Query: 220 QRNALYAMNGYCGLGTKPLKICTAVPK 300
+A+ MN + +KPL + A K
Sbjct: 310 ATSAVTEMNSKM-VCSKPLYVAIAQRK 335
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 237
S++VGDL PDV++ L+ F S + + +V DN + + GY +V F + A+
Sbjct: 33 SLYVGDLHPDVNESILFEKF-SAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMD 91
Query: 238 AMNGYCGLGTKPLKI 282
MN + L KP++I
Sbjct: 92 TMN-FEALHGKPMRI 105
Score = 37.1 bits (82), Expect = 0.005
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+V+V + + +L ++FA K+ +I + +V + G +KG+GFV F N +E A+ A
Sbjct: 154 NVYVKNFGDHYNKETLEKLFA-KFGNITSCEV-MTVEGKSKGFGFVAFANPEEAETAVQA 211
Query: 241 MNGYCGLGTK-PLKICTAVPK 300
++ GT L +C A K
Sbjct: 212 LHDSTIEGTDLKLHVCRAQKK 232
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 49.6 bits (113), Expect = 9e-07
Identities = 23/64 (35%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALY 237
+++VG+L P+VD+ LY F++ ++ K++ D +SG +KG+ F+ F + + AL
Sbjct: 101 NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALE 160
Query: 238 AMNG 249
AMNG
Sbjct: 161 AMNG 164
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 49.6 bits (113), Expect = 9e-07
Identities = 23/64 (35%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALY 237
+++VG+L P+VD+ LY F++ ++ K++ D +SG +KG+ F+ F + + AL
Sbjct: 111 NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALE 170
Query: 238 AMNG 249
AMNG
Sbjct: 171 AMNG 174
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 48.8 bits (111), Expect = 1e-06
Identities = 29/87 (33%), Positives = 51/87 (58%)
Frame = +1
Query: 40 MQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDE 219
+Q + +++V ++ D++D L F+S + +I +AKV++D +G +KG+GFV F +E
Sbjct: 337 VQRYQGVNLYVKNIEEDLNDDGLRDHFSS-FGTITSAKVMVDENGRSKGFGFVCFEKPEE 395
Query: 220 QRNALYAMNGYCGLGTKPLKICTAVPK 300
A+ MN +G KPL + A K
Sbjct: 396 ATAAVTDMNSKM-IGAKPLYVALAQRK 421
Score = 45.6 bits (103), Expect = 1e-05
Identities = 22/63 (34%), Positives = 38/63 (60%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
++++ +L +D+ S+Y F S + +I + KV D+ G +KGYGFV F E + A+
Sbjct: 146 NIFIKNLDRVIDNKSVYDTF-SLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEK 204
Query: 241 MNG 249
+NG
Sbjct: 205 VNG 207
Score = 41.9 bits (94), Expect = 2e-04
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+V+V + +D L +F SK+ I +A V+ D G KG+GFV F ++D A+
Sbjct: 239 NVFVKNFGEHLDQEKLSAMF-SKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEK 297
Query: 241 MNGYCGLGTK-PLKICTAVPK 300
+N GT L +C A K
Sbjct: 298 LNDSILEGTDCKLSVCRAQKK 318
Score = 37.1 bits (82), Expect = 0.005
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 237
S+++GDL PDV + L+ F S + + +V DN S + GY +V F + AL
Sbjct: 58 SLYIGDLHPDVSEAMLFEKF-SMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALD 116
Query: 238 AMN 246
MN
Sbjct: 117 TMN 119
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 48.8 bits (111), Expect = 1e-06
Identities = 29/87 (33%), Positives = 51/87 (58%)
Frame = +1
Query: 40 MQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDE 219
+Q + +++V ++ D++D L F+S + +I +AKV++D +G +KG+GFV F +E
Sbjct: 337 VQRYQGVNLYVKNIEEDLNDDGLRDHFSS-FGTITSAKVMVDENGRSKGFGFVCFEKPEE 395
Query: 220 QRNALYAMNGYCGLGTKPLKICTAVPK 300
A+ MN +G KPL + A K
Sbjct: 396 ATAAVTDMNSKM-IGAKPLYVALAQRK 421
Score = 45.6 bits (103), Expect = 1e-05
Identities = 22/63 (34%), Positives = 38/63 (60%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
++++ +L +D+ S+Y F S + +I + KV D+ G +KGYGFV F E + A+
Sbjct: 146 NIFIKNLDRVIDNKSVYDTF-SLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEK 204
Query: 241 MNG 249
+NG
Sbjct: 205 VNG 207
Score = 41.9 bits (94), Expect = 2e-04
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+V+V + +D L +F SK+ I +A V+ D G KG+GFV F ++D A+
Sbjct: 239 NVFVKNFGEHLDQEKLSAMF-SKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEK 297
Query: 241 MNGYCGLGTK-PLKICTAVPK 300
+N GT L +C A K
Sbjct: 298 LNDSILEGTDCKLSVCRAQKK 318
Score = 37.1 bits (82), Expect = 0.005
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 237
S+++GDL PDV + L+ F S + + +V DN S + GY +V F + AL
Sbjct: 58 SLYIGDLHPDVSEAMLFEKF-SMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALD 116
Query: 238 AMN 246
MN
Sbjct: 117 TMN 119
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 47.2 bits (107), Expect = 5e-06
Identities = 26/75 (34%), Positives = 44/75 (58%)
Frame = +1
Query: 58 FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALY 237
+ ++V +LS D DD L+++F S++ +I K++ D + KGY FV N E NA+
Sbjct: 374 YCLFVYNLSSDTDDTLLWQLF-SQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAML 432
Query: 238 AMNGYCGLGTKPLKI 282
++NG L K L++
Sbjct: 433 SLNG-TNLAGKTLQV 446
Score = 37.9 bits (84), Expect = 0.003
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 237
+++V + + + L +F + I T++++ DN +G +KG GFVRF +DE A+
Sbjct: 129 NLYVSGIPKSMTLHELESIFRP-FGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIK 187
Query: 238 AMNGYCGLGTKPLKICTAVPKPKSN 312
+NG G P SN
Sbjct: 188 TLNGSIPSGCSEQITVKFANNPASN 212
Score = 32.7 bits (71), Expect = 0.10
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 139 IKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVP 297
I++ K++ D +G + GYGFV + E++ A+ + NG L K +K+ A P
Sbjct: 68 IESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNG-LRLQNKTIKVSYARP 120
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 43.2 bits (97), Expect = 7e-05
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 237
++++ L D D L FA + I +AKV +D + +K +GFV + N NA+
Sbjct: 336 NLFIYHLPQDFGDSDLINTFAP-FGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAIS 394
Query: 238 AMNGYCGLGTKPLKI 282
AMNG+ +G+K LK+
Sbjct: 395 AMNGF-QIGSKRLKV 408
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 43.2 bits (97), Expect = 7e-05
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 237
++++ L D D L FA + I +AKV +D + +K +GFV + N NA+
Sbjct: 500 NLFIYHLPQDFGDSDLINTFAP-FGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAIS 558
Query: 238 AMNGYCGLGTKPLKI 282
AMNG+ +G+K LK+
Sbjct: 559 AMNGF-QIGSKRLKV 572
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 43.2 bits (97), Expect = 7e-05
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 237
++++ L D D L FA + I +AKV +D + +K +GFV + N NA+
Sbjct: 500 NLFIYHLPQDFGDSDLINTFAP-FGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAIS 558
Query: 238 AMNGYCGLGTKPLKI 282
AMNG+ +G+K LK+
Sbjct: 559 AMNGF-QIGSKRLKV 572
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 43.2 bits (97), Expect = 7e-05
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 237
++++ L D D L FA + I +AKV +D + +K +GFV + N NA+
Sbjct: 429 NLFIYHLPQDFGDSDLINTFAP-FGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAIS 487
Query: 238 AMNGYCGLGTKPLKI 282
AMNG+ +G+K LK+
Sbjct: 488 AMNGF-QIGSKRLKV 501
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 43.2 bits (97), Expect = 7e-05
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 237
++++ L D D L FA + I +AKV +D + +K +GFV + N NA+
Sbjct: 500 NLFIYHLPQDFGDSDLINTFAP-FGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAIS 558
Query: 238 AMNGYCGLGTKPLKI 282
AMNG+ +G+K LK+
Sbjct: 559 AMNGF-QIGSKRLKV 572
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 42.3 bits (95), Expect = 1e-04
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 237
SV+VG++S DV + ++ +F SK ++ + K++ D +G KGYGF+ F + A+
Sbjct: 19 SVFVGNISYDVSEDTIRSIF-SKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIR 77
Query: 238 AMNGY 252
+NGY
Sbjct: 78 NLNGY 82
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 39.5 bits (88), Expect = 0.001
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVRFGNEDEQRNALY 237
++++ L + D L ++FA + I +AKV +D + +K +GFV + N + A+
Sbjct: 430 NLFIYHLPQEFGDAELIQMFAP-FGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAIT 488
Query: 238 AMNGYCGLGTKPLKICTAVPKPKS 309
AMNG+ +G K LK+ P+ +S
Sbjct: 489 AMNGF-QIGMKRLKVQLKRPRNES 511
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 39.5 bits (88), Expect = 0.001
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVRFGNEDEQRNALY 237
++++ L + D L ++FA + I +AKV +D + +K +GFV + N + A+
Sbjct: 430 NLFIYHLPQEFGDAELIQMFAP-FGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAIT 488
Query: 238 AMNGYCGLGTKPLKICTAVPKPKS 309
AMNG+ +G K LK+ P+ +S
Sbjct: 489 AMNGF-QIGMKRLKVQLKRPRNES 511
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 36.7 bits (81), Expect = 0.006
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVRFGNEDEQRNALY 237
++++ L P+ +D L R SKY +I + K I+D + KGYGFV F + A+
Sbjct: 108 NLYIRGLMPNTND-DLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVD 166
Query: 238 AMN 246
+N
Sbjct: 167 GLN 169
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 36.7 bits (81), Expect = 0.006
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVRFGNEDEQRNALY 237
++++ L P+ +D L R SKY +I + K I+D + KGYGFV F + A+
Sbjct: 82 NLYIRGLMPNTND-DLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVD 140
Query: 238 AMN 246
+N
Sbjct: 141 GLN 143
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 36.3 bits (80), Expect = 0.009
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 243
++VG + L F K+ ++K K++ G +KGYGF+ F ED+
Sbjct: 68 IFVGGFPTSTTETELREHF-EKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEEIRKLT 126
Query: 244 NGYCGLGTKPLKICTAVPKPKSN 312
++ L + A+ K SN
Sbjct: 127 PKQLEFRSRKLNLGPAIRKINSN 149
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 36.3 bits (80), Expect = 0.009
Identities = 22/85 (25%), Positives = 39/85 (45%)
Frame = +1
Query: 49 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRN 228
++ F V+V + PD+ + L VF + +K +G+G++ F N Q
Sbjct: 204 KKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSE 263
Query: 229 ALYAMNGYCGLGTKPLKICTAVPKP 303
A+ MN + LG + L++ V P
Sbjct: 264 AIAGMNMF-DLGGQYLRVGKCVTPP 287
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 36.3 bits (80), Expect = 0.009
Identities = 22/85 (25%), Positives = 39/85 (45%)
Frame = +1
Query: 49 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRN 228
++ F V+V + PD+ + L VF + +K +G+G++ F N Q
Sbjct: 204 KKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSE 263
Query: 229 ALYAMNGYCGLGTKPLKICTAVPKP 303
A+ MN + LG + L++ V P
Sbjct: 264 AIAGMNMF-DLGGQYLRVGKCVTPP 287
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 36.3 bits (80), Expect = 0.009
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 243
++VG + L F K+ ++K K++ G +KGYGF+ F ED+
Sbjct: 69 IFVGGFPTSTTETELREHF-EKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEEIRKLT 127
Query: 244 NGYCGLGTKPLKICTAVPKPKSN 312
++ L + A+ K SN
Sbjct: 128 PKQLEFRSRKLNLGPAIRKINSN 150
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 35.1 bits (77), Expect = 0.020
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 240
++VG + DV + +L +F K I ++++D SG ++GY FV + N+++ A
Sbjct: 202 IYVGHIPTDVFEDTLVPLF-EKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKT 260
Query: 241 MNGYCGLGTKPLKICTAV 294
+G+ KPLK+ ++
Sbjct: 261 YDGHEISTGKPLKVNVSI 278
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 34.7 bits (76), Expect = 0.026
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +1
Query: 37 NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNE 213
N H R+ +++VG + DV + L F + + + +D SG +G+GFV F
Sbjct: 4 NFPHNRKRTLYVGGFTEDVTEKVLMAAFI-PFGDVVAISIPMDYESGKHRGFGFVEFDMA 62
Query: 214 DEQRNALYAMN 246
++ A+ MN
Sbjct: 63 EDAAMAIDNMN 73
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 33.5 bits (73), Expect = 0.060
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 166 NSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKSN 312
+SG KG+ +V F NE + A+ +NG G + LK+ A + +S+
Sbjct: 48 DSGSFKGFAYVTFENEQQMNTAISGLNG-ADFGNRVLKVNRAQQRDRSD 95
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 33.1 bits (72), Expect = 0.079
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +1
Query: 49 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRN 228
++ F V+V + PD+ + L VF + +K +G+G++ F N Q
Sbjct: 204 KKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSE 263
Query: 229 ALYAMN 246
A+ MN
Sbjct: 264 AIAGMN 269
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +1
Query: 112 RVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMN 246
R F KY I A + G +G+ FV F +E NAL N
Sbjct: 20 RKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAKSN 64
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 28.7 bits (61), Expect = 1.7
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVI-LDNSGYTKGYGFVRFGNEDEQRNALYA 240
V++ +LS D + L + SK+ I A + +SG++KG FV F E N +
Sbjct: 265 VFLRNLSYDTKE-ELIKEELSKFGKIDLAIICKYKDSGHSKGTAFVHFSTPIEASNCIEG 323
Query: 241 MNGYCGLGTKPLKICTAVPKPKS 309
+ + + +K A+P+ ++
Sbjct: 324 VEDGVIIDNRLVKANLAIPRKEA 346
>Z78536-2|CAB01716.1| 363|Caenorhabditis elegans Hypothetical
protein C07A4.3 protein.
Length = 363
Score = 27.5 bits (58), Expect = 3.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 121 ASKYTSIKTAKVILDNSGYTKGYGF 195
+SK+ S KT L + YT+GYGF
Sbjct: 261 SSKFPSPKTCAAALIHGFYTEGYGF 285
>U80452-12|AAB37851.1| 195|Caenorhabditis elegans Hypothetical
protein C16C8.7 protein.
Length = 195
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 263 PSPQ*PFMAYSALRCSSSLPNLTKPYPFV*PELSNITLAVF 141
P P+ PF++ L P+++ P PF L + LAVF
Sbjct: 27 PVPRSPFLSIIRLASGHIFPSISPPIPFSKMRLLILHLAVF 67
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 27.5 bits (58), Expect = 3.9
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 237
S+ + +LS L R F +Y I + D S +KG+GFVRF + +AL
Sbjct: 20 SLKIDNLSYQTTPNDLRRTF-ERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78
Query: 238 AMNG 249
+G
Sbjct: 79 RTDG 82
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 27.5 bits (58), Expect = 3.9
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 237
S+ + +LS L R F +Y I + D S +KG+GFVRF + +AL
Sbjct: 20 SLKIDNLSYQTTPNDLRRTF-ERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78
Query: 238 AMNG 249
+G
Sbjct: 79 RTDG 82
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 26.6 bits (56), Expect = 6.9
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 243
+++G L + + + + S + +K + +D+ G +KGY F + + A+ +
Sbjct: 293 IFIGGLPNYLTEDQVKELLCS-FGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 351
Query: 244 NGYCGLGTKPLKI 282
NG LG K L +
Sbjct: 352 NG-MQLGDKQLVV 363
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 26.6 bits (56), Expect = 6.9
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 243
+++G L + + + + S + +K + +D+ G +KGY F + + A+ +
Sbjct: 293 IFIGGLPNYLTEDQVKELLCS-FGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 351
Query: 244 NGYCGLGTKPLKI 282
NG LG K L +
Sbjct: 352 NG-MQLGDKQLVV 363
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 26.6 bits (56), Expect = 6.9
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 243
+++G L + + + + S + +K + +D+ G +KGY F + + A+ +
Sbjct: 268 IFIGGLPNYLTEDQVKELLCS-FGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 326
Query: 244 NGYCGLGTKPLKI 282
NG LG K L +
Sbjct: 327 NG-MQLGDKQLVV 338
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 26.6 bits (56), Expect = 6.9
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 243
+++G L + + + + S + +K + +D+ G +KGY F + + A+ +
Sbjct: 271 IFIGGLPNYLTEDQVKELLCS-FGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 329
Query: 244 NGYCGLGTKPLKI 282
NG LG K L +
Sbjct: 330 NG-MQLGDKQLVV 341
>Z92790-5|CAI79208.1| 169|Caenorhabditis elegans Hypothetical
protein H03G16.6 protein.
Length = 169
Score = 26.2 bits (55), Expect = 9.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 80 RSPTQTENSLSCCILALVSLDAVFSL 3
R+PT+T LSCC + ++L + +
Sbjct: 132 RAPTRTAKILSCCRIGCITLAGIVGI 157
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 26.2 bits (55), Expect = 9.1
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 243
+++G L+ V + + F Y I+ V+L N G+GFV F ++ + +A++ +
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRG-YGQIRD--VLLKN-----GFGFVEFDDKRDAEDAVHDL 56
Query: 244 NG 249
NG
Sbjct: 57 NG 58
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 26.2 bits (55), Expect = 9.1
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 243
+++G L+ V + + F Y I+ V+L N G+GFV F ++ + +A++ +
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRG-YGQIRD--VLLKN-----GFGFVEFDDKRDAEDAVHDL 56
Query: 244 NG 249
NG
Sbjct: 57 NG 58
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 26.2 bits (55), Expect = 9.1
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 243
+++G L+ V + + F Y I+ V+L N G+GFV F ++ + +A++ +
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRG-YGQIRD--VLLKN-----GFGFVEFDDKRDAEDAVHDL 56
Query: 244 NG 249
NG
Sbjct: 57 NG 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.135 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,520,094
Number of Sequences: 27780
Number of extensions: 162815
Number of successful extensions: 436
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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