Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313D03f
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   1.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   2.3  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   7.1  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   7.1  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   7.1  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   7.1  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   7.1  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +1

Query: 130 YTSIKTAKVILDNSGYTK--GYGFVR 201
           Y  +K   ++LD+ GY K   +GF +
Sbjct: 489 YRDLKPENLLLDSQGYVKLVDFGFAK 514


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 202 FGNEDEQRNALYAMNGYCGLGTKP 273
           FG+E E R   Y ++GY   G +P
Sbjct: 1   FGDEHEYRLTKYLLDGY-DAGVRP 23


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 312 SNNCSVYFYNFN 347
           +NNC   +YN N
Sbjct: 101 NNNCKKLYYNIN 112


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 312 SNNCSVYFYNFN 347
           +NNC   +YN N
Sbjct: 106 NNNCKKLYYNIN 117


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 312 SNNCSVYFYNFN 347
           +NNC   +YN N
Sbjct: 106 NNNCKKLYYNIN 117


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 312 SNNCSVYFYNFN 347
           +NNC   +YN N
Sbjct: 106 NNNCKKLYYNIN 117


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 312 SNNCSVYFYNFN 347
           +NNC   +YN N
Sbjct: 106 NNNCKKLYYNIN 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.135    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,581
Number of Sequences: 438
Number of extensions: 2180
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)