Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313D03f
(408 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 94 4e-20
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 90 5e-19
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 90 5e-19
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 90 6e-19
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 89 1e-18
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 89 1e-18
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 87 6e-18
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 87 6e-18
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 81 2e-16
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 80 6e-16
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 58 2e-09
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 56 1e-08
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 56 1e-08
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 55 2e-08
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 53 6e-08
At5g51300.2 68418.m06360 splicing factor-related contains simila... 53 9e-08
At5g51300.1 68418.m06359 splicing factor-related contains simila... 53 9e-08
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 52 1e-07
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 52 1e-07
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 51 3e-07
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 51 3e-07
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 51 3e-07
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 51 3e-07
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 50 5e-07
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 50 6e-07
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 48 2e-06
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 47 4e-06
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 47 4e-06
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 47 6e-06
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 47 6e-06
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 47 6e-06
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 46 1e-05
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 46 1e-05
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 46 1e-05
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 46 1e-05
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 46 1e-05
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 46 1e-05
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 46 1e-05
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 46 1e-05
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 46 1e-05
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 46 1e-05
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 45 2e-05
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 44 3e-05
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 44 3e-05
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 44 4e-05
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 42 1e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 42 1e-04
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 42 2e-04
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 42 2e-04
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 42 2e-04
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 42 2e-04
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 40 6e-04
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 39 0.001
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 39 0.001
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 39 0.001
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 38 0.003
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 38 0.003
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 38 0.003
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 38 0.003
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 38 0.003
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 38 0.003
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 37 0.005
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 37 0.005
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 37 0.005
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 37 0.005
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 36 0.008
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 36 0.008
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 36 0.008
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 36 0.008
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 36 0.008
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 36 0.008
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 36 0.010
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 36 0.010
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 36 0.014
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 35 0.018
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 35 0.018
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 35 0.018
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 35 0.018
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 35 0.024
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 35 0.024
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 35 0.024
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 35 0.024
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 34 0.032
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 34 0.032
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 34 0.032
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 34 0.032
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 34 0.042
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 33 0.074
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 33 0.074
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 33 0.074
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 33 0.074
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 33 0.074
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 33 0.074
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 33 0.097
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 32 0.13
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 32 0.13
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 32 0.13
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 32 0.13
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 32 0.13
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 32 0.17
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 32 0.17
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 31 0.22
At2g47310.1 68415.m05906 flowering time control protein-related ... 31 0.30
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 31 0.39
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 31 0.39
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 30 0.52
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 30 0.52
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 30 0.52
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 30 0.52
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 30 0.52
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 30 0.69
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 29 0.91
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 29 1.6
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 29 1.6
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 29 1.6
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 29 1.6
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 28 2.1
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 28 2.1
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 28 2.1
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 28 2.8
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 28 2.8
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 27 3.7
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 27 4.8
At4g33890.2 68417.m04809 expressed protein 27 4.8
At4g33890.1 68417.m04808 expressed protein 27 4.8
At3g48210.1 68416.m05260 expressed protein 27 4.8
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 27 4.8
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 27 4.8
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 27 6.4
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 27 6.4
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 27 6.4
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 93.9 bits (223), Expect = 4e-20
Identities = 49/104 (47%), Positives = 72/104 (69%), Gaps = 4/104 (3%)
Frame = +1
Query: 1 FRLNTASRET--RANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NS 171
FR+N AS T + +++ + SV+VGDLSPDV D L+ F+ +Y S+K+AKV++D N+
Sbjct: 181 FRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNT 240
Query: 172 GYTKGYGFVRFGNEDEQRNALYAMNG-YCGLGTKPLKICTAVPK 300
G +KGYGFVRFG+E+E+ AL MNG YC + +++ A PK
Sbjct: 241 GRSKGYGFVRFGDENERSRALTEMNGAYC--SNRQMRVGIATPK 282
Score = 34.3 bits (75), Expect = 0.032
Identities = 19/63 (30%), Positives = 36/63 (57%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+++VG + PDV D L + F S++ + + K+ + KG GFV+F + +A+ +
Sbjct: 322 TIFVGGIDPDVIDEDLRQPF-SQFGEVVSVKIPVG-----KGCGFVQFADRKSAEDAIES 375
Query: 241 MNG 249
+NG
Sbjct: 376 LNG 378
Score = 32.3 bits (70), Expect = 0.13
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRF 204
++WVGDL +D+ L+ F S + + KVI + + ++GYGFV F
Sbjct: 109 TLWVGDLLHWMDETYLHSCF-SHTGEVSSVKVIRNKLTSQSEGYGFVEF 156
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 90.2 bits (214), Expect = 5e-19
Identities = 50/107 (46%), Positives = 69/107 (64%), Gaps = 3/107 (2%)
Frame = +1
Query: 1 FRLNTASRETRANMQHER--EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NS 171
FRLN AS T + S++VGDLSPDV D L+ F+ KY S+K AKV+LD N+
Sbjct: 176 FRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANT 235
Query: 172 GYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKSN 312
G +KGYGFVRFG+E+E+ A+ MNG ++ ++I A P+ K+N
Sbjct: 236 GRSKGYGFVRFGDENERTKAMTEMNG-VKCSSRAMRIGPATPR-KTN 280
Score = 43.2 bits (97), Expect = 7e-05
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFAS-KYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNAL 234
++WVGDL +D+ L FAS I + KVI + N+G ++GYGFV F + D L
Sbjct: 102 TIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Query: 235 YAMNG 249
NG
Sbjct: 162 REFNG 166
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 90.2 bits (214), Expect = 5e-19
Identities = 50/107 (46%), Positives = 69/107 (64%), Gaps = 3/107 (2%)
Frame = +1
Query: 1 FRLNTASRETRANMQHER--EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NS 171
FRLN AS T + S++VGDLSPDV D L+ F+ KY S+K AKV+LD N+
Sbjct: 176 FRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANT 235
Query: 172 GYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKSN 312
G +KGYGFVRFG+E+E+ A+ MNG ++ ++I A P+ K+N
Sbjct: 236 GRSKGYGFVRFGDENERTKAMTEMNG-VKCSSRAMRIGPATPR-KTN 280
Score = 43.2 bits (97), Expect = 7e-05
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFAS-KYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNAL 234
++WVGDL +D+ L FAS I + KVI + N+G ++GYGFV F + D L
Sbjct: 102 TIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Query: 235 YAMNG 249
NG
Sbjct: 162 REFNG 166
Score = 29.9 bits (64), Expect = 0.69
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+++VG L V D L + F +++ I + K+ + KG GFV+F N AL
Sbjct: 305 TIFVGGLDSSVTDEDLKQPF-NEFGEIVSVKIPVG-----KGCGFVQFVNRPNAEEALEK 358
Query: 241 MNG 249
+NG
Sbjct: 359 LNG 361
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 89.8 bits (213), Expect = 6e-19
Identities = 48/104 (46%), Positives = 68/104 (65%), Gaps = 4/104 (3%)
Frame = +1
Query: 1 FRLNTASRETRANMQHER--EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NS 171
FRLN AS T E + S++VGDL+PDV D L FA +Y S+K AKV++D N+
Sbjct: 192 FRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNT 251
Query: 172 GYTKGYGFVRFGNEDEQRNALYAMNG-YCGLGTKPLKICTAVPK 300
G +KGYGFVRFG+E+E+ A+ MNG +C ++ +++ A PK
Sbjct: 252 GRSKGYGFVRFGDENERSRAMTEMNGAFC--SSRQMRVGIATPK 293
Score = 35.9 bits (79), Expect = 0.010
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSG-YTKGYGFVRFGNEDEQRNALY 237
++WVGDL +D+ L+ F S + + KVI + ++GYGFV F + AL
Sbjct: 120 TLWVGDLLHWMDETYLHTCF-SHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQ 178
Query: 238 AMNG 249
+ +G
Sbjct: 179 SFSG 182
Score = 31.1 bits (67), Expect = 0.30
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+++VG L DV + L + F S + + + K+ + KG GFV+F N A+
Sbjct: 328 TIFVGGLDADVTEEDLMQPF-SDFGEVVSVKIPVG-----KGCGFVQFANRQSAEEAIGN 381
Query: 241 MNG 249
+NG
Sbjct: 382 LNG 384
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 89.0 bits (211), Expect = 1e-18
Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 2/102 (1%)
Frame = +1
Query: 1 FRLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGY 177
FRLN AS + + + S++VGDL+PDV DY L F Y+S++ AKV+ D ++G
Sbjct: 97 FRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGR 156
Query: 178 TKGYGFVRFGNEDEQRNALYAMNG-YCGLGTKPLKICTAVPK 300
+KGYGFV+F E E+ A+ MNG YC T+P++I A PK
Sbjct: 157 SKGYGFVKFAEESERNRAMAEMNGLYC--STRPMRISAATPK 196
Score = 35.9 bits (79), Expect = 0.010
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 237
++W+GDL VD+ L F S+ + + KVI + +G +GYGF+ F + L
Sbjct: 25 TLWIGDLQYWVDENYLTSCF-SQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQ 83
Query: 238 AMNGYCGLGTK 270
NG GT+
Sbjct: 84 TYNGTQMPGTE 94
Score = 26.6 bits (56), Expect = 6.4
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
++ V +L +V + L + F+ + +VI TKGYG+V+F A+
Sbjct: 238 TISVANLDQNVTEEELKKAFS------QLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQR 291
Query: 241 MNGYCGLGTKPLKI 282
M G +G + ++I
Sbjct: 292 MQGQV-IGQQAVRI 304
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 89.0 bits (211), Expect = 1e-18
Identities = 49/107 (45%), Positives = 69/107 (64%), Gaps = 3/107 (2%)
Frame = +1
Query: 1 FRLNTASRETRANMQHER--EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NS 171
FRLN AS T + S++VGDL+PDV D L+ F+ KY S+K AKV+LD N+
Sbjct: 178 FRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANT 237
Query: 172 GYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKSN 312
G +KGYGFVRFG+E+E+ A+ MNG ++ ++I A P+ K+N
Sbjct: 238 GRSKGYGFVRFGDENERTKAMTEMNG-VKCSSRAMRIGPATPR-KTN 282
Score = 41.1 bits (92), Expect = 3e-04
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFAS-KYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNAL 234
++WVGDL +D+ L F S + I + KVI + ++G ++GYGFV F + D L
Sbjct: 104 TIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVL 163
Query: 235 YAMNG 249
NG
Sbjct: 164 QEFNG 168
Score = 31.1 bits (67), Expect = 0.30
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+++VG L V D L + F S++ I + K+ + KG GFV+F N AL
Sbjct: 307 TIFVGGLDSSVTDEDLKQPF-SEFGEIVSVKIPVG-----KGCGFVQFVNRPNAEEALEK 360
Query: 241 MNG 249
+NG
Sbjct: 361 LNG 363
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 86.6 bits (205), Expect = 6e-18
Identities = 45/101 (44%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Frame = +1
Query: 1 FRLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGY 177
FRLN AS + +++++VGDL+ DV DY L F + Y S+K AKV++D +G
Sbjct: 136 FRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGR 195
Query: 178 TKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 300
TKGYGFVRF +E EQ A+ MNG T+P++I A K
Sbjct: 196 TKGYGFVRFSDESEQIRAMTEMNG-VPCSTRPMRIGPAASK 235
Score = 38.7 bits (86), Expect = 0.001
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 237
++W+GDL +D+ LY FA + +AKVI + +G +GYGF+ F + L
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMV-SAKVIRNKQTGQVEGYGFIEFASHAAAERVLQ 121
Query: 238 AMN 246
N
Sbjct: 122 TFN 124
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 86.6 bits (205), Expect = 6e-18
Identities = 45/101 (44%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Frame = +1
Query: 1 FRLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGY 177
FRLN AS + +++++VGDL+ DV DY L F + Y S+K AKV++D +G
Sbjct: 136 FRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGR 195
Query: 178 TKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 300
TKGYGFVRF +E EQ A+ MNG T+P++I A K
Sbjct: 196 TKGYGFVRFSDESEQIRAMTEMNG-VPCSTRPMRIGPAASK 235
Score = 38.7 bits (86), Expect = 0.001
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 237
++W+GDL +D+ LY FA + +AKVI + +G +GYGF+ F + L
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMV-SAKVIRNKQTGQVEGYGFIEFASHAAAERVLQ 121
Query: 238 AMN 246
N
Sbjct: 122 TFN 124
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 81.4 bits (192), Expect = 2e-16
Identities = 48/104 (46%), Positives = 65/104 (62%), Gaps = 4/104 (3%)
Frame = +1
Query: 1 FRLNTASRET-RANMQHER-EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NS 171
FRLN A Q E + +++VGDL+P+V DY L F + Y S+K AKV+LD +
Sbjct: 133 FRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTT 192
Query: 172 GYTKGYGFVRFGNEDEQRNALYAMNG-YCGLGTKPLKICTAVPK 300
G +KGYGFVRF +E+EQ A+ MNG YC T+P++I A K
Sbjct: 193 GRSKGYGFVRFADENEQMRAMTEMNGQYC--STRPMRIGPAANK 234
Score = 40.7 bits (91), Expect = 4e-04
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 237
S+W+GDL +D+ + VFA + +AKVI + +G ++GYGF+ F + L
Sbjct: 61 SLWIGDLQQWMDENYIMSVFAQSGEAT-SAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQ 119
Query: 238 AMNG 249
NG
Sbjct: 120 TYNG 123
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 79.8 bits (188), Expect = 6e-16
Identities = 47/103 (45%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Frame = +1
Query: 1 FRLNTASRETRANMQHER-EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSG 174
FRLN A Q E E +V+VGDL+PDV D+ L F + Y+S+K AKV+ D +G
Sbjct: 153 FRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTG 212
Query: 175 YTKGYGFVRFGNEDEQRNALYAMNG-YCGLGTKPLKICTAVPK 300
+KGYGFVRF +E EQ A+ MNG YC ++P++ A K
Sbjct: 213 RSKGYGFVRFADESEQIRAMTEMNGQYC--SSRPMRTGPAANK 253
Score = 46.8 bits (106), Expect = 6e-06
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN--SGYTKGYGFVRFGNEDEQRNAL 234
S+W+GDL P +D+ L VF T TA ++ N +GY++GYGF+ F N L
Sbjct: 81 SLWIGDLQPWMDENYLMNVFG--LTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNL 138
Query: 235 YAMNG 249
NG
Sbjct: 139 QTYNG 143
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 58.4 bits (135), Expect = 2e-09
Identities = 28/65 (43%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Frame = +1
Query: 58 FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNAL 234
F+++VGDLSP+V D +LY+ F S ++S A+V+ D +G ++G+GFV F N+ + + A+
Sbjct: 144 FNIFVGDLSPEVTDATLYQSF-SVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI 202
Query: 235 YAMNG 249
MNG
Sbjct: 203 NEMNG 207
Score = 33.9 bits (74), Expect = 0.042
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Frame = +1
Query: 13 TASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVF-ASKYTSIKTAKVILDNSGYTKGY 189
T + ET N + + +V+VG+L+P+V L+R F A I+ +V D KG+
Sbjct: 252 TLNEETPEN--NSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRD-----KGF 304
Query: 190 GFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKP 303
GFVR+ E A+ N L + +K C+ KP
Sbjct: 305 GFVRYNTHPEAALAIQMGNTQPYLFNRQIK-CSWGNKP 341
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 55.6 bits (128), Expect = 1e-08
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Frame = +1
Query: 58 FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNAL 234
F+++VGDLSP+V D +L+ F S + S A+V+ D +G ++G+GFV F N+ + + A+
Sbjct: 148 FNIFVGDLSPEVTDAALFDSF-SAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI 206
Query: 235 YAMNG 249
MNG
Sbjct: 207 NEMNG 211
Score = 37.9 bits (84), Expect = 0.003
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTS-IKTAKVILDNSGYTKGYGFVRFGNEDEQRNALY 237
+V+VG+LSP+V L+R+F + I+ +V D KG+GFVR+ DE A+
Sbjct: 270 TVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-----KGFGFVRYNTHDEAALAIQ 324
Query: 238 AMNGYCGLGTKPLKICTAVPKP 303
N L ++ ++ C+ KP
Sbjct: 325 MGNAQPFLFSRQIR-CSWGNKP 345
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 55.6 bits (128), Expect = 1e-08
Identities = 30/80 (37%), Positives = 49/80 (61%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
++++ +L VDD L +F S+Y ++ ++KV+L+ G ++G+GFV + N +E AL
Sbjct: 333 NLYLKNLDDSVDDEKLKEMF-SEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSE 391
Query: 241 MNGYCGLGTKPLKICTAVPK 300
MNG +G KPL I A K
Sbjct: 392 MNGKM-IGRKPLYIALAQRK 410
Score = 48.4 bits (110), Expect = 2e-06
Identities = 21/63 (33%), Positives = 42/63 (66%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
++++ +L +D+ +L+ F+S + +I + KV +D +G +KGYGFV+F E+ + A+
Sbjct: 137 NIFIKNLDASIDNKALFETFSS-FGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDK 195
Query: 241 MNG 249
+NG
Sbjct: 196 LNG 198
Score = 44.0 bits (99), Expect = 4e-05
Identities = 23/85 (27%), Positives = 45/85 (52%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
S++ GDL P V + L+ +F ++ + +V D + + GY ++ F N ++ A+ A
Sbjct: 50 SLYAGDLDPKVTEAHLFDLF-KHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEA 108
Query: 241 MNGYCGLGTKPLKICTAVPKPKSNL 315
+N Y L +P++I + P + L
Sbjct: 109 LN-YTPLFDRPIRIMLSNRDPSTRL 132
Score = 37.1 bits (82), Expect = 0.005
Identities = 27/88 (30%), Positives = 44/88 (50%)
Frame = +1
Query: 37 NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNED 216
N R +V+V +L ++ + L + F K+ I +A V+ D SG ++ +GFV F +
Sbjct: 222 NTPTPRFTNVYVKNLPKEIGEDELRKTFG-KFGVISSAVVMRDQSGNSRCFGFVNFECTE 280
Query: 217 EQRNALYAMNGYCGLGTKPLKICTAVPK 300
+A+ MNG LG L + A K
Sbjct: 281 AAASAVEKMNG-ISLGDDVLYVGRAQKK 307
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 54.8 bits (126), Expect = 2e-08
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +1
Query: 49 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQR 225
E ++ ++ GDL +V+D L + FA ++ + AKVI D +G TKGYGFV F N +
Sbjct: 134 ENDYRLFCGDLGNEVNDDVLSKAFA-RFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLA 192
Query: 226 NALYAMNGYCGLGTKPLKI 282
AL MNG +G +P+K+
Sbjct: 193 AALKEMNGKY-VGNRPIKL 210
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 53.2 bits (122), Expect = 6e-08
Identities = 29/93 (31%), Positives = 53/93 (56%)
Frame = +1
Query: 37 NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNED 216
+M+ + +++V +L VD+ L +F S++ +I + KV++ ++G +KG GFV F +
Sbjct: 216 DMKTRKGMNLYVKNLDDSVDNTKLEELF-SEFGTITSCKVMVHSNGISKGVGFVEFSTSE 274
Query: 217 EQRNALYAMNGYCGLGTKPLKICTAVPKPKSNL 315
E A+ MNG +G KP+ + A K + L
Sbjct: 275 EASKAMLKMNGKM-VGNKPIYVSLAQCKEQHKL 306
Score = 37.9 bits (84), Expect = 0.003
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+V+V +L +D+ L +F S + + + KV D SG +KGYGFV+F ++ A
Sbjct: 32 NVFVKNLDESIDNKQLCDMF-SAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNF 90
Query: 241 MNG 249
NG
Sbjct: 91 HNG 93
Score = 35.9 bits (79), Expect = 0.010
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +1
Query: 28 TRANMQHEREFS-VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRF 204
+R R F+ V+V +L D L R+F ++ I +A V+ D G ++ +GFV F
Sbjct: 108 SRGQWDKSRVFTNVYVKNLVETATDADLKRLFG-EFGEITSAVVMKDGEGKSRRFGFVNF 166
Query: 205 GNEDEQRNALYAMNG 249
+ A+ MNG
Sbjct: 167 EKAEAAVTAIEKMNG 181
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 52.8 bits (121), Expect = 9e-08
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Frame = +1
Query: 19 SRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGF 195
S T+ + E ++++G L P ++D L +F+S + I AKVI D +G +KGYGF
Sbjct: 467 STPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSS-FGEIVMAKVIKDRVTGLSKGYGF 525
Query: 196 VRFGNEDEQRNALYAMNGYCGLG-TKPLKICTAVPKP 303
V++ + A+ AMNGY G T ++I P P
Sbjct: 526 VKYADVQMANTAVQAMNGYRFEGRTLAVRIAGKSPPP 562
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 52.8 bits (121), Expect = 9e-08
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Frame = +1
Query: 19 SRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGF 195
S T+ + E ++++G L P ++D L +F+S + I AKVI D +G +KGYGF
Sbjct: 467 STPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSS-FGEIVMAKVIKDRVTGLSKGYGF 525
Query: 196 VRFGNEDEQRNALYAMNGYCGLG-TKPLKICTAVPKP 303
V++ + A+ AMNGY G T ++I P P
Sbjct: 526 VKYADVQMANTAVQAMNGYRFEGRTLAVRIAGKSPPP 562
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 52.4 bits (120), Expect = 1e-07
Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Frame = +1
Query: 19 SRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGF 195
SR RA +E F V+VG+L DVD+ L ++F S++ + A+V+ D +G ++G+GF
Sbjct: 231 SRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-SEHGKVVEARVVYDRETGRSRGFGF 289
Query: 196 VRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKP 303
V + DE A+ A++G L + +++ A +P
Sbjct: 290 VTMSDVDELNEAISALDGQ-NLEGRAIRVNVAEERP 324
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 52.0 bits (119), Expect = 1e-07
Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 240
+++G LSP D++SL F+S + + A+V+ + +G ++GYGFV F +ED +A+ A
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSS-FNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 241 MNG 249
MNG
Sbjct: 92 MNG 94
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 51.2 bits (117), Expect = 3e-07
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +1
Query: 19 SRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGF 195
SR R ++ F ++VG+L DVD L R+F S++ + A+V+ D +G ++G+GF
Sbjct: 194 SRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLF-SEHGKVVDARVVSDRETGRSRGFGF 252
Query: 196 VRFGNEDEQRNALYAMNG 249
V+ NE+E A+ A++G
Sbjct: 253 VQMSNENEVNVAIAALDG 270
Score = 33.9 bits (74), Expect = 0.042
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNA 231
E ++VG+L DVD +L +F T ++ ++VI + ++ ++G+GFV +E A
Sbjct: 112 EAKLFVGNLPYDVDSQALAMLFEQAGT-VEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170
Query: 232 LYAMNGYCGLGTKPLKICTAVPK 300
+ N + + + L + A P+
Sbjct: 171 VEKFNSF-EVNGRRLTVNRAAPR 192
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 51.2 bits (117), Expect = 3e-07
Identities = 26/80 (32%), Positives = 49/80 (61%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
++++ +L V+D L +F S+Y ++ + KV++++ G ++G+GFV + N +E A+
Sbjct: 329 NLYLKNLDDSVNDEKLKEMF-SEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKE 387
Query: 241 MNGYCGLGTKPLKICTAVPK 300
MNG +G KPL + A K
Sbjct: 388 MNGKM-IGRKPLYVALAQRK 406
Score = 48.8 bits (111), Expect = 1e-06
Identities = 23/63 (36%), Positives = 41/63 (65%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+V++ +L +D+ +LY F+S + +I + KV +D G +KGYGFV+F E+ + A+
Sbjct: 133 NVFIKNLDASIDNKALYETFSS-FGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDK 191
Query: 241 MNG 249
+NG
Sbjct: 192 LNG 194
Score = 44.4 bits (100), Expect = 3e-05
Identities = 24/92 (26%), Positives = 48/92 (52%)
Frame = +1
Query: 40 MQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDE 219
+Q S++VGDL P V++ L +F ++ + +V D + + GY +V F N ++
Sbjct: 39 LQTHPNSSLYVGDLDPSVNESHLLDLF-NQVAPVHNLRVCRDLTHRSLGYAYVNFANPED 97
Query: 220 QRNALYAMNGYCGLGTKPLKICTAVPKPKSNL 315
A+ ++N Y + +P++I + P + L
Sbjct: 98 ASRAMESLN-YAPIRDRPIRIMLSNRDPSTRL 128
Score = 41.5 bits (93), Expect = 2e-04
Identities = 27/80 (33%), Positives = 42/80 (52%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+V+V +L ++ D L + F KY I +A V+ D SG ++ +GFV F + + A+
Sbjct: 226 NVYVKNLPKEITDDELKKTFG-KYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEK 284
Query: 241 MNGYCGLGTKPLKICTAVPK 300
MNG LG L + A K
Sbjct: 285 MNG-ISLGEDVLYVGRAQKK 303
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 51.2 bits (117), Expect = 3e-07
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Frame = +1
Query: 58 FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNAL 234
F+++VGDLSP+V D L+ F S Y + A+V+ D +G ++G+GFV F N+ + + A+
Sbjct: 139 FNIFVGDLSPEVTDAMLFTCF-SVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI 197
Query: 235 YAMNGYCGLGTKPLK 279
+ G LG++ ++
Sbjct: 198 DEITGK-WLGSRQIR 211
Score = 35.9 bits (79), Expect = 0.010
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTS-IKTAKVILDNSGYTKGYGFVRFGNEDEQRNALY 237
+V+VG+L+P+V L+R F S I+ +V D KG+GFVR+ E A+
Sbjct: 261 TVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHVEAALAIQ 315
Query: 238 AMNGYCGLGTKPLKICTAVPKP 303
N + L + +K C+ KP
Sbjct: 316 MGNTHSYLSGRQMK-CSWGSKP 336
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 50.8 bits (116), Expect = 3e-07
Identities = 28/82 (34%), Positives = 49/82 (59%)
Frame = +1
Query: 4 RLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTK 183
R+ +SR++ A + +++V +L VD+ +L+ F+ T I + KV D+ G ++
Sbjct: 118 RITYSSRDSSA--RRSGVGNLFVKNLDKSVDNKTLHEAFSGCGT-IVSCKVATDHMGQSR 174
Query: 184 GYGFVRFGNEDEQRNALYAMNG 249
GYGFV+F ED +NA+ +NG
Sbjct: 175 GYGFVQFDTEDSAKNAIEKLNG 196
Score = 46.8 bits (106), Expect = 6e-06
Identities = 30/80 (37%), Positives = 43/80 (53%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+++V +L V D L +FA ++ +I + KV+ D SG +KG GFV F E L
Sbjct: 329 NLYVKNLDDTVTDEKLRELFA-EFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNE 387
Query: 241 MNGYCGLGTKPLKICTAVPK 300
MNG +G KPL + A K
Sbjct: 388 MNGKM-VGGKPLYVALAQRK 406
Score = 43.6 bits (98), Expect = 5e-05
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +1
Query: 22 RETRANMQHEREFS-VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFV 198
+E R + + +F+ V+V +LS D L F +Y SI +A V+ D G ++ +GFV
Sbjct: 212 KEERESAADKMKFTNVYVKNLSEATTDDELKTTFG-QYGSISSAVVMRDGDGKSRCFGFV 270
Query: 199 RFGNEDEQRNALYAMNG 249
F N ++ A+ A+NG
Sbjct: 271 NFENPEDAARAVEALNG 287
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 50.4 bits (115), Expect = 5e-07
Identities = 26/68 (38%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Frame = +1
Query: 58 FSVWVGDLSPDVDDYSLYRVFA---SKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQR 225
F+++VGDLSP+V D +L+ F+ S + + A+V+ D +G ++G+GFV F N+ + +
Sbjct: 148 FNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQ 207
Query: 226 NALYAMNG 249
A+ MNG
Sbjct: 208 TAINEMNG 215
Score = 37.9 bits (84), Expect = 0.003
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTS-IKTAKVILDNSGYTKGYGFVRFGNEDEQRNALY 237
+V+VG+LSP+V L+R+F + I+ +V D KG+GFVR+ DE A+
Sbjct: 274 TVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-----KGFGFVRYNTHDEAALAIQ 328
Query: 238 AMNGYCGLGTKPLKICTAVPKP 303
N L ++ ++ C+ KP
Sbjct: 329 MGNAQPFLFSRQIR-CSWGNKP 349
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 50.0 bits (114), Expect = 6e-07
Identities = 29/81 (35%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYA 240
V+VG+LS VDD +L +F S+ + A+VI D +SG +KG+GFV + + E +NA+ +
Sbjct: 206 VYVGNLSWGVDDMALESLF-SEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 241 MNGYCGLGTKPLKICTAVPKP 303
++G L + +++ A +P
Sbjct: 265 LDG-ADLDGRQIRVSEAEARP 284
Score = 44.4 bits (100), Expect = 3e-05
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 231
+ ++VG+L +VD L ++F S +++ +VI D +G ++G+GFV + E A
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESA-GNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAA 148
Query: 232 LYAMNGYCGLGTKPLKICTAVPKPK 306
NGY L +PL++ P PK
Sbjct: 149 AQQFNGY-ELDGRPLRVNAGPPPPK 172
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 48.0 bits (109), Expect = 2e-06
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +1
Query: 22 RETRANMQHEREFS-VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFV 198
R+ R + ++ +F+ V+V +L+ D L F +Y I +A V+ D G +KG+GFV
Sbjct: 16 RQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFG-EYGKITSAVVMKDGEGKSKGFGFV 74
Query: 199 RFGNEDEQRNALYAMNGY 252
F N D+ A+ ++NG+
Sbjct: 75 NFENADDAARAVESLNGH 92
Score = 46.8 bits (106), Expect = 6e-06
Identities = 25/80 (31%), Positives = 46/80 (57%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+++V +L P + D L +F S + ++ ++KV+ D +G +KG GFV F +E A+
Sbjct: 133 NLYVKNLDPSISDEKLKEIF-SPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQ 191
Query: 241 MNGYCGLGTKPLKICTAVPK 300
++G + +KPL + A K
Sbjct: 192 LSGKM-IESKPLYVAIAQRK 210
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 47.2 bits (107), Expect = 4e-06
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +1
Query: 49 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQR 225
E E+ +VG L+ +D L R F S++ + +K+I D SG ++G+GFV F +E R
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 226 NALYAMNGYCGLG 264
+A+ MNG G G
Sbjct: 62 DAIEEMNGSGGGG 74
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 47.2 bits (107), Expect = 4e-06
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Frame = +1
Query: 19 SRETRANMQHEREFS-VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGF 195
+++ RA M ++ + V+V +L V D L+ +F S+Y ++ + V+ D G ++G+GF
Sbjct: 188 NKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLF-SQYGTVSSVVVMRDGMGRSRGFGF 246
Query: 196 VRFGNEDEQRNALYAMNGYCG--LGTKPLKICTAVPK 300
V F N + NA AM CG LG+K L + A+ K
Sbjct: 247 VNFCNPE---NAKKAMESLCGLQLGSKKLFVGKALKK 280
Score = 45.6 bits (103), Expect = 1e-05
Identities = 27/80 (33%), Positives = 46/80 (57%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+++V +LS +++ L +F Y I +AKV+ +G +KG+GFV F N +E + A
Sbjct: 305 NLYVKNLSESMNETRLREIFGC-YGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRY 363
Query: 241 MNGYCGLGTKPLKICTAVPK 300
+NG+ G KP+ + A K
Sbjct: 364 LNGFLVDG-KPIVVRVAERK 382
Score = 38.3 bits (85), Expect = 0.002
Identities = 23/70 (32%), Positives = 39/70 (55%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+++V +L + L R+F + SI + KV+ +N G +KG+GFV+F E +A A
Sbjct: 113 NLYVKNLDSSITSSCLERMFCP-FGSILSCKVVEEN-GQSKGFGFVQFDTEQSAVSARSA 170
Query: 241 MNGYCGLGTK 270
++G G K
Sbjct: 171 LHGSMVYGKK 180
Score = 37.1 bits (82), Expect = 0.005
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Frame = +1
Query: 25 ETRA--NMQHEREF-SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGF 195
ET+A N QH F S++VGDLSPDV + L F+ + +G + Y +
Sbjct: 7 ETQALGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAY 66
Query: 196 VRFGNEDEQRNALYAMNGYCGLGTKPLKI 282
+ F + NA+ +N + L K ++I
Sbjct: 67 INFDSPFSASNAMTRLN-HSDLKGKAMRI 94
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 46.8 bits (106), Expect = 6e-06
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYA 240
++VG+LS VDD +L +F ++ + A+VI D +SG +KG+GFV + E + A+ +
Sbjct: 251 LYVGNLSWGVDDMALENLF-NEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 241 MNGYCGLGTKPLKICTAVPKP 303
+NG L + +++ A +P
Sbjct: 310 LNG-ADLDGRQIRVSEAEARP 329
Score = 44.4 bits (100), Expect = 3e-05
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 231
+ ++VG+LS +VD L ++F S +++ +VI D +G ++G+GFV E A
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESA-GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156
Query: 232 LYAMNGYCGLGTKPLKICTAVPKPK 306
NGY G +PL++ P PK
Sbjct: 157 AQQFNGYEFEG-RPLRVNAGPPPPK 180
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 46.8 bits (106), Expect = 6e-06
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYA 240
++VG+LS VDD +L +F ++ + A+VI D +SG +KG+GFV + E + A+ +
Sbjct: 259 LYVGNLSWGVDDMALENLF-NEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 241 MNGYCGLGTKPLKICTAVPKP 303
+NG L + +++ A +P
Sbjct: 318 LNG-ADLDGRQIRVSEAEARP 337
Score = 44.4 bits (100), Expect = 3e-05
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 231
+ ++VG+LS +VD L ++F S +++ +VI D +G ++G+GFV E A
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESA-GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156
Query: 232 LYAMNGYCGLGTKPLKICTAVPKPK 306
NGY G +PL++ P PK
Sbjct: 157 AQQFNGYEFEG-RPLRVNAGPPPPK 180
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 46.8 bits (106), Expect = 6e-06
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +1
Query: 49 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQR 225
+ E+ +VG L+ D+ S+ R F +++ + +K+I+D +G +KG+ FV F +ED R
Sbjct: 41 DNEYRCFVGGLAWATDEQSIERCF-NEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMR 99
Query: 226 NALYAMNG 249
A+ MNG
Sbjct: 100 TAIDRMNG 107
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 46.0 bits (104), Expect = 1e-05
Identities = 26/63 (41%), Positives = 37/63 (58%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
SV+VG L D+ + ++ RVF S Y S+ T K++ D S K YGFV F N +A+
Sbjct: 8 SVYVGGLPYDITEEAVRRVF-SIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIED 66
Query: 241 MNG 249
M+G
Sbjct: 67 MDG 69
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 46.0 bits (104), Expect = 1e-05
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +1
Query: 49 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQR 225
E E+ +VG L+ +D L R F S++ + +K+I D SG ++G+GFV F +E R
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 226 NALYAMNG 249
+A+ MNG
Sbjct: 62 DAIEEMNG 69
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 46.0 bits (104), Expect = 1e-05
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +1
Query: 49 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQR 225
E E+ +VG L+ +D L R F S++ + +K+I D SG ++G+GFV F +E R
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 226 NALYAMNG 249
+A+ MNG
Sbjct: 62 DAIEEMNG 69
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 46.0 bits (104), Expect = 1e-05
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +1
Query: 49 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQR 225
E E+ +VG L+ +D L R F S++ + +K+I D SG ++G+GFV F +E R
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 226 NALYAMNG 249
+A+ MNG
Sbjct: 62 DAIEEMNG 69
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 46.0 bits (104), Expect = 1e-05
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 243
++VG+L ++ + L +VF S + S++ +V D +G KG+GFV+F ++ RNAL +
Sbjct: 287 LYVGNLHINMSEDDLRKVFES-FGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL-NL 344
Query: 244 NGYCGLGTKPLKI 282
NG + + +K+
Sbjct: 345 NGQLEIAGRAIKV 357
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 45.6 bits (103), Expect = 1e-05
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +1
Query: 16 ASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYG 192
A +T A Q E +++V LS L FA ++ + AKV+ D SGY+KG+G
Sbjct: 42 AESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFA-QFGEVADAKVVTDRVSGYSKGFG 100
Query: 193 FVRFGNEDEQRNALYAMNG 249
FVR+ ++ + M+G
Sbjct: 101 FVRYATLEDSAKGIAGMDG 119
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 45.6 bits (103), Expect = 1e-05
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 40 MQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNED 216
M + E+ ++G L+ D L F KY + AKV+LD SG ++G+GF+ F +
Sbjct: 1 MSEDPEYRCFIGGLAWTTSDRGLRDAF-EKYGHLVEAKVVLDKFSGRSRGFGFITFDEKK 59
Query: 217 EQRNALYAMNG 249
A+ AMNG
Sbjct: 60 AMDEAIAAMNG 70
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 45.6 bits (103), Expect = 1e-05
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 240
++VG LS DD SL + F S + + A VI D +G ++G+GFV F ED NA+
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTS-FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 241 MNG 249
M+G
Sbjct: 96 MDG 98
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 45.6 bits (103), Expect = 1e-05
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 240
++VG LS DD SL + F S + + A VI D +G ++G+GFV F ED NA+
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTS-FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 241 MNG 249
M+G
Sbjct: 96 MDG 98
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 45.6 bits (103), Expect = 1e-05
Identities = 20/63 (31%), Positives = 39/63 (61%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
++++ +L +D +L+ F S + I + KV +D SG +KGYGFV++ ++ + A+
Sbjct: 134 NIFIKNLDKSIDHKALHETF-SAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDK 192
Query: 241 MNG 249
+NG
Sbjct: 193 LNG 195
Score = 45.6 bits (103), Expect = 1e-05
Identities = 29/80 (36%), Positives = 43/80 (53%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+++V +L V D L FA + +I + KV+ D SG ++G GFV F +E A+
Sbjct: 328 NLYVKNLDESVTDDKLREHFAP-FGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITE 386
Query: 241 MNGYCGLGTKPLKICTAVPK 300
MNG + TKPL + A K
Sbjct: 387 MNGKM-IVTKPLYVALAQRK 405
Score = 45.2 bits (102), Expect = 2e-05
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVIL-DNSGYTKGYGFVRFGNEDEQRNALY 237
+V+V +LS + D L +VF + T+ VI+ D G +KG+GFV F N D+ A+
Sbjct: 225 NVYVKNLSESLSDEELNKVFGE--FGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVD 282
Query: 238 AMNG 249
A+NG
Sbjct: 283 ALNG 286
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 44.8 bits (101), Expect = 2e-05
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 240
+++G LS VD+ SL F+S + + ++ D SG ++G+GFV F E + +A A
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSS-FGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 241 MNGYCGLGTKPLKICTAVPK 300
M+G GL +PL+I A+ +
Sbjct: 102 MDGK-GLLGRPLRISFALER 120
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 44.4 bits (100), Expect = 3e-05
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 231
E+ +VG L+ DD +L FA +Y + +K+I D +G ++G+GFV F +E ++A
Sbjct: 7 EYRCFVGGLAWATDDRALETAFA-QYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDA 65
Query: 232 LYAMNG 249
+ MNG
Sbjct: 66 IEGMNG 71
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 44.4 bits (100), Expect = 3e-05
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 231
E+ +VG L+ DD +L FA +Y + +K+I D +G ++G+GFV F +E ++A
Sbjct: 7 EYRCFVGGLAWATDDRALETAFA-QYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDA 65
Query: 232 LYAMNG 249
+ MNG
Sbjct: 66 IEGMNG 71
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 44.0 bits (99), Expect = 4e-05
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYA 240
++VG LSP+V D L R F S++ I +++L+ ++G ++G+GF+ F + ++
Sbjct: 9 IFVGGLSPEVTDRDLERAF-SRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 241 MNGYCGLGTKPLKICTAVPK 300
M+G G + + + A PK
Sbjct: 68 MHGR-DFGDRVISVNRAEPK 86
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 42.3 bits (95), Expect = 1e-04
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYT-KGYGFVRFGNEDEQRNALYA 240
++V LS D SL ++F S + IK A++I D+ KG+GF+ F +ED+ R AL +
Sbjct: 9 LFVSRLSAYTTDQSLRQLF-SPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 241 MNG 249
++G
Sbjct: 68 LDG 70
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 42.3 bits (95), Expect = 1e-04
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 231
E SV V +LS D + L +F + ++ V +D +G ++G+GFV F + ++ + A
Sbjct: 212 ENSVRVTNLSEDTREPDLMELF-HPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRA 270
Query: 232 LYAMNGYCGLGTKPLKICTAVPKP 303
+ +NGY G L++ A P+P
Sbjct: 271 INKLNGY-GYDNLILRVEWATPRP 293
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 41.5 bits (93), Expect = 2e-04
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 240
+++G LS DD SL FA + + AKVI+D +G ++G+GFV F +E A+
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 241 MNG 249
M+G
Sbjct: 96 MDG 98
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 41.5 bits (93), Expect = 2e-04
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 240
+++G LS DD SL FA + + AKVI+D +G ++G+GFV F +E A+
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 241 MNG 249
M+G
Sbjct: 96 MDG 98
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 41.5 bits (93), Expect = 2e-04
Identities = 22/83 (26%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = +1
Query: 4 RLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYT 180
R+N AS++ ++ + ++++G+L PDVD+ LY F++ K++ D ++G +
Sbjct: 97 RVNKASQDKKSL---DVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNS 153
Query: 181 KGYGFVRFGNEDEQRNALYAMNG 249
+G+GF+ + + + A+ +M G
Sbjct: 154 RGFGFISYDSFEASDAAIESMTG 176
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 41.5 bits (93), Expect = 2e-04
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 240
++VG LSP D L F S + I A V+LD SG ++G+GFV + + + NA+ A
Sbjct: 38 IFVGGLSPSTDVELLKEAFGS-FGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 241 M 243
M
Sbjct: 97 M 97
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 39.9 bits (89), Expect = 6e-04
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = +1
Query: 49 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQR 225
E E ++VG+LS V SL F + + A+V+ D ++G ++GYGFV + ++ E
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFR-ECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEME 232
Query: 226 NALYAMNGY 252
AL +++G+
Sbjct: 233 TALESLDGF 241
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 39.1 bits (87), Expect = 0.001
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 240
+++G LS + L F SK + A++++D S +KG+GFV F + DE + AL
Sbjct: 36 LFIGGLSFCTTEQGLSEAF-SKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 241 MNG 249
NG
Sbjct: 95 FNG 97
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 39.1 bits (87), Expect = 0.001
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVRFGNEDEQRNALY 237
++++ ++ + +D L F + + +AKV +D + G +K +GF+ + ++ +NA+
Sbjct: 340 NLFIYNIPREFEDQELAATF-QPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 398
Query: 238 AMNGYCGLGTKPLKI 282
MNG C L K LK+
Sbjct: 399 TMNG-CQLSGKKLKV 412
Score = 31.9 bits (69), Expect = 0.17
Identities = 17/65 (26%), Positives = 39/65 (60%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234
E ++VG L +V + + +F S+Y +IK +++ + +KG F+++ ++++ A+
Sbjct: 108 EHKLFVGMLPKNVSETEVQSLF-SEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAM 166
Query: 235 YAMNG 249
A+NG
Sbjct: 167 EALNG 171
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 39.1 bits (87), Expect = 0.001
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVRFGNEDEQRNALY 237
++++ ++ + +D L F + + +AKV +D + G +K +GF+ + ++ +NA+
Sbjct: 331 NLFIYNIPREFEDQELAATF-QPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 389
Query: 238 AMNGYCGLGTKPLKI 282
MNG C L K LK+
Sbjct: 390 TMNG-CQLSGKKLKV 403
Score = 31.9 bits (69), Expect = 0.17
Identities = 17/65 (26%), Positives = 39/65 (60%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234
E ++VG L +V + + +F S+Y +IK +++ + +KG F+++ ++++ A+
Sbjct: 99 EHKLFVGMLPKNVSETEVQSLF-SEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAM 157
Query: 235 YAMNG 249
A+NG
Sbjct: 158 EALNG 162
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 37.9 bits (84), Expect = 0.003
Identities = 24/80 (30%), Positives = 44/80 (55%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+++V +++ V + L + F S+ +I + K++ D G +KG+GFV F +E +A+
Sbjct: 305 NIYVKNVNVAVTEEELRKHF-SQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363
Query: 241 MNGYCGLGTKPLKICTAVPK 300
+G G KPL + A K
Sbjct: 364 FHGQMFHG-KPLYVAIAQKK 382
Score = 37.1 bits (82), Expect = 0.005
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+V+V +L V + L +F K+ +I + KV G ++GYGFV+F ED A+
Sbjct: 113 NVFVKNLPESVTNAVLQDMF-KKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQT 171
Query: 241 MN 246
+N
Sbjct: 172 LN 173
Score = 36.7 bits (81), Expect = 0.006
Identities = 24/84 (28%), Positives = 42/84 (50%)
Frame = +1
Query: 49 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRN 228
E+ ++++ +L DV + L FA ++ I + + D + +GY FV F N ++ R
Sbjct: 198 EKYTNLYMKNLDADVSEDLLREKFA-EFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARR 256
Query: 229 ALYAMNGYCGLGTKPLKICTAVPK 300
A +NG G+K L + A K
Sbjct: 257 AAETVNG-TKFGSKCLYVGRAQKK 279
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 37.9 bits (84), Expect = 0.003
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNA 231
V+VG L+ + +L R F +Y I A VI D N+G +KGYGFV F + + R A
Sbjct: 26 VFVGGLAWETQSETLRRHF-DQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 81
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 37.5 bits (83), Expect = 0.003
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +1
Query: 88 DVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVRFGNEDEQRNALYAMNGYCGLG 264
D+D L + + SK+ ++ V+ D S G ++G+G+V F + ++ +NAL G LG
Sbjct: 13 DIDSDGL-KDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL---KGEHFLG 68
Query: 265 TKPLKICTAVPK 300
+ L++ A PK
Sbjct: 69 NRILEVKVATPK 80
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 37.5 bits (83), Expect = 0.003
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNA 231
E++ +V L D D+ L +F SK+ ++ +K+I D ++G ++ +GFV F E +A
Sbjct: 6 EYTCFVRGLDQDTDEKDLTDIF-SKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDA 64
Query: 232 LYAMN 246
+ M+
Sbjct: 65 IMIMD 69
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 37.5 bits (83), Expect = 0.003
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNA 231
E ++VG LS DV + L F +Y I ++++ ++G +G+GF+ F + +A
Sbjct: 11 ESRIFVGGLSWDVTERQLESTF-DRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDA 69
Query: 232 LYAMNGYCGLGTKPLKICTAVPK 300
+ M+G LG K + + A PK
Sbjct: 70 IKHMHGR-ELGNKVISVNKAEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 37.5 bits (83), Expect = 0.003
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNA 231
E ++VG LS DV + L F +Y I ++++ ++G +G+GF+ F + +A
Sbjct: 11 ESRIFVGGLSWDVTERQLESTF-DRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDA 69
Query: 232 LYAMNGYCGLGTKPLKICTAVPK 300
+ M+G LG K + + A PK
Sbjct: 70 IKHMHGR-ELGNKVISVNKAEPK 91
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 37.1 bits (82), Expect = 0.005
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVIL-DNSGYTKGYGFVRFGNEDEQRNALY 237
S++V S V + L +VF S++ + K+I + + + GYG+V F ++++ ++A+
Sbjct: 59 SLFVKGFSDSVSEGRLKKVF-SEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVE 117
Query: 238 AMNG 249
AMNG
Sbjct: 118 AMNG 121
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 37.1 bits (82), Expect = 0.005
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVIL-DNSGYTKGYGFVRFGNEDEQRNALY 237
S++V S V + L +VF S++ + K+I + + + GYG+V F ++++ ++A+
Sbjct: 78 SLFVKGFSDSVSEGRLKKVF-SEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVE 136
Query: 238 AMNG 249
AMNG
Sbjct: 137 AMNG 140
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 37.1 bits (82), Expect = 0.005
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 240
V+VG+LSP D L F S Y ++ A V+ D + ++G+GFV + + E A+
Sbjct: 5 VYVGNLSPTTTDDMLREAF-SGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 241 MNG 249
M+G
Sbjct: 64 MDG 66
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 37.1 bits (82), Expect = 0.005
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVF-ASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
++V +L+ L +F A+ + + V D G + GYGFV F +E NA+
Sbjct: 196 LYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITK 255
Query: 241 MNG 249
+NG
Sbjct: 256 LNG 258
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 36.3 bits (80), Expect = 0.008
Identities = 18/74 (24%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYA 240
++VG+L ++ + L ++F + + ++ ++ LD +G KG+GF++F + + A A
Sbjct: 267 LYVGNLHFNMSELQLRQIFEA-FGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 241 MNGYCGLGTKPLKI 282
+NG + + +K+
Sbjct: 326 LNGKLEIAGRTIKV 339
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 36.3 bits (80), Expect = 0.008
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVRFGNEDEQRNALY 237
++++ ++ + D L F S + + +AKV +D + G +K +GFV + ++ +NA+
Sbjct: 350 NLFIYNIPREFGDQELAAAFQS-FGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAID 408
Query: 238 AMNGYCGLGTKPLKI 282
MNG LG K LK+
Sbjct: 409 MMNGR-HLGGKKLKV 422
Score = 33.9 bits (74), Expect = 0.042
Identities = 17/65 (26%), Positives = 38/65 (58%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234
E ++VG L +V + + +F SKY +IK +++ +KG F+++ +++ +A+
Sbjct: 105 EHKLFVGMLPKNVSEAEVQSLF-SKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAM 163
Query: 235 YAMNG 249
++NG
Sbjct: 164 ESING 168
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 36.3 bits (80), Expect = 0.008
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYA 240
V+ G+L ++ L F + + AKVI + N+G ++G+GF+ F + + ++AL
Sbjct: 221 VYAGNLGWNLTSQGLKDAFGDQ-PGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 241 MNG 249
MNG
Sbjct: 280 MNG 282
Score = 31.5 bits (68), Expect = 0.22
Identities = 19/86 (22%), Positives = 39/86 (45%)
Frame = +1
Query: 25 ETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRF 204
E + E ++VG+L + L ++F T + V + ++G+GFV
Sbjct: 105 EKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTM 164
Query: 205 GNEDEQRNALYAMNGYCGLGTKPLKI 282
G+ +E + A+ N +G + +K+
Sbjct: 165 GSIEEAKEAMQMFNS-SQIGGRTVKV 189
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 36.3 bits (80), Expect = 0.008
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNAL 234
++V L D SL F +Y I+ K ++D SG +KGYGF+ F + RNAL
Sbjct: 130 IFVHGLGWDTKADSLIDAF-KQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNAL 186
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 36.3 bits (80), Expect = 0.008
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNA 231
V+VG L+ + +L + F +Y I A VI D N+G +KGYGFV F + + R A
Sbjct: 26 VFVGGLAWETQSETLRQHF-EQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRA 81
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 36.3 bits (80), Expect = 0.008
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = +1
Query: 40 MQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNED 216
M ++R + ++VG ++ + + +L + F S+Y ++ A V + +G +G+GFVRF N+
Sbjct: 1 MDYDR-YKLFVGGIAKETSEEALKQYF-SRYGAVLEAVVAKEKVTGKPRGFGFVRFANDC 58
Query: 217 EQRNALYAMNGYCGLGTKPLKICTAVPK 300
+ AL + G KP+ + A+ K
Sbjct: 59 DVVKALRDTHFILG---KPVDVRKAIRK 83
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 35.9 bits (79), Expect = 0.010
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 231
E SV V +LS D L +F + ++ V +D + ++G+GFV F + ++ + A
Sbjct: 173 ENSVRVTNLSEDTRGPDLMELFRP-FGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRA 231
Query: 232 LYAMNGYCGLGTKPLKICTAVPK 300
+ +NGY G L++ + PK
Sbjct: 232 INKLNGY-GYDNLILRVEWSTPK 253
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 35.9 bits (79), Expect = 0.010
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 130 YTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYAMNG 249
+ IK + LD SGY KGY + + ++E ++A+ AMNG
Sbjct: 118 FGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNG 158
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 35.5 bits (78), Expect = 0.014
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +1
Query: 58 FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALY 237
+ V+VG+L+ V L +F+ K + + + + G+GFV F +E++ A+
Sbjct: 177 YKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIV 236
Query: 238 AMN 246
A+N
Sbjct: 237 ALN 239
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 35.1 bits (77), Expect = 0.018
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVRFGNEDEQRNALYA 240
++VG + VDD ++ F ++ +K +++ D+S G ++G+GFV + +ED + L A
Sbjct: 132 IFVGGIPSSVDDDE-FKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESED-MVDHLLA 189
Query: 241 MNGYCGLGTKPLKICTAVPKPKSNL 315
L ++I A PK +++
Sbjct: 190 KGNRIELSGTQVEIKKAEPKKPNSV 214
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.1 bits (77), Expect = 0.018
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNAL 234
++V L D +L F +Y I+ K + D SG +KGYGF+ + + RNAL
Sbjct: 142 IFVHGLGWDTKTETLIEAF-KQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.1 bits (77), Expect = 0.018
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNAL 234
++V L D +L F +Y I+ K + D SG +KGYGF+ + + RNAL
Sbjct: 142 IFVHGLGWDTKTETLIEAF-KQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.1 bits (77), Expect = 0.018
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNAL 234
++V L D +L F +Y I+ K + D SG +KGYGF+ + + RNAL
Sbjct: 142 IFVHGLGWDTKTETLIEAF-KQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 34.7 bits (76), Expect = 0.024
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234
EF ++VG L+ + + +F ++ ++ ++ D ++G GFV++ +++ A+
Sbjct: 210 EFKLFVGSLNKQATEKEVEEIFL-QFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAI 268
Query: 235 YAMNG-YCGLG-TKPLKICTAVPK-PK 306
+NG Y G +PL + A PK PK
Sbjct: 269 DGLNGTYTMRGCNQPLIVRFAEPKRPK 295
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 34.7 bits (76), Expect = 0.024
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234
EF ++VG L+ + + +F ++ ++ ++ D ++G GFV++ +++ A+
Sbjct: 210 EFKLFVGSLNKQATEKEVEEIFL-QFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAI 268
Query: 235 YAMNG-YCGLG-TKPLKICTAVPK-PK 306
+NG Y G +PL + A PK PK
Sbjct: 269 DGLNGTYTMRGCNQPLIVRFAEPKRPK 295
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 34.7 bits (76), Expect = 0.024
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYA 240
++VG L+ + ++ R F ++ I A VI D N+G +KGYGFV F + A
Sbjct: 24 IFVGGLAWETQRDTMRRYF-EQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 241 MN 246
MN
Sbjct: 83 MN 84
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 34.7 bits (76), Expect = 0.024
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 169 SGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 300
+G KG+ FV+F + + NA+ NG+ G +P+ + AVPK
Sbjct: 368 TGLPKGFAFVKFTCKKDAANAIKKFNGHM-FGKRPIAVDWAVPK 410
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 34.3 bits (75), Expect = 0.032
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +1
Query: 52 REFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNA 231
R+ +++V +LSP + + F + ++I+++ G G GFV F + +E + A
Sbjct: 487 RKKTLFVANLSPRTKISHIIKFFKD-VAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKA 545
Query: 232 LYAMNG 249
L MNG
Sbjct: 546 LQKMNG 551
Score = 30.7 bits (66), Expect = 0.39
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 118 FASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNGYC 255
F K + ++I++ G G GFV F + +E AL NG C
Sbjct: 146 FFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKNGEC 191
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 34.3 bits (75), Expect = 0.032
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Frame = +1
Query: 7 LNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTK 183
LNT SR + + ++ + ++VG L P + D +R + Y + ++ D + +
Sbjct: 95 LNT-SRSSGGDAYNKTK-KIFVGGLPPTLTDEE-FRQYFEVYGPVTDVAIMYDQATNRPR 151
Query: 184 GYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 300
G+GFV F +ED + L+ + L K +++ A+PK
Sbjct: 152 GFGFVSFDSEDAVDSVLH--KTFHDLSGKQVEVKRALPK 188
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 34.3 bits (75), Expect = 0.032
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNAL 234
V+VG L+ + + R F ++ I A +I D N+G +KGYGFV F D A+
Sbjct: 19 VFVGGLAWETPTDEMRRYF-EQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 34.3 bits (75), Expect = 0.032
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNAL 234
V+VG L+ + + R F ++ I A +I D N+G +KGYGFV F D A+
Sbjct: 19 VFVGGLAWETPTDEMRRYF-EQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 33.9 bits (74), Expect = 0.042
Identities = 17/65 (26%), Positives = 38/65 (58%)
Frame = +1
Query: 55 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 234
E ++VG L +V + + +F SKY +IK +++ +KG F+++ +++ +A+
Sbjct: 105 EHKLFVGMLPKNVSEAEVQSLF-SKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAM 163
Query: 235 YAMNG 249
++NG
Sbjct: 164 ESING 168
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 33.1 bits (72), Expect = 0.074
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +1
Query: 79 LSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNG 249
LS D SL ++FA IK + + KG+GF+ F +ED+ + AL A+NG
Sbjct: 78 LSAYTTDQSLRQLFAPFARLIKDQQ-----TQRPKGFGFITFESEDDAQKALKALNG 129
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 33.1 bits (72), Expect = 0.074
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNED 216
+++ L+ D L +F+S Y ++ A VILD +G +KGYGFV F + D
Sbjct: 77 LFIRGLAADTTTEGLRSLFSS-YGDLEEAIVILDKVTGKSKGYGFVTFMHVD 127
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 33.1 bits (72), Expect = 0.074
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNED 216
+++ L+ D L +F+S Y ++ A VILD +G +KGYGFV F + D
Sbjct: 77 LFIRGLAADTTTEGLRSLFSS-YGDLEEAIVILDKVTGKSKGYGFVTFMHVD 127
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 33.1 bits (72), Expect = 0.074
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +1
Query: 52 REFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYT-KGYGFVRFGNEDEQRN 228
R ++VG L P + +R + Y + A +++D + +G+GFV F +ED
Sbjct: 108 RTKKIFVGGLPPALTSDE-FRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDL 166
Query: 229 ALYAMNGYCGLGTKPLKICTAVPK 300
L+ + L K +++ A+PK
Sbjct: 167 VLH--KTFHDLNGKQVEVKRALPK 188
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 33.1 bits (72), Expect = 0.074
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNA 231
V+VG L+ + SL F ++ I A VI D +SG +KGYGFV F + + + A
Sbjct: 9 VFVGGLAWETHKVSLRNYF-EQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKA 64
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 33.1 bits (72), Expect = 0.074
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNA 231
V+VG L+ + SL F ++ I A VI D +SG +KGYGFV F + + + A
Sbjct: 9 VFVGGLAWETHKVSLRNYF-EQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKA 64
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 32.7 bits (71), Expect = 0.097
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYA 240
++V L+P +D L+ +F S++ ++ +A VI D +G + Y F+ F N++ A +
Sbjct: 245 LFVCKLNPVTEDEDLHTIF-SRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFK 303
Query: 241 MN 246
M+
Sbjct: 304 MD 305
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 32.3 bits (70), Expect = 0.13
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Frame = +1
Query: 19 SRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGF 195
S E + +++ V+VG + D+ + L VF S+Y I +I D +G +KG+ F
Sbjct: 23 SDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVF-SQYGEIVDVNLIRDKGTGKSKGFAF 81
Query: 196 VRFGNEDEQRNALYAMNGYCGLG-TKPLKICTAVPK 300
+ + ++ A+ +NG LG T + C A K
Sbjct: 82 LAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKK 117
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 32.3 bits (70), Expect = 0.13
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 231
V+VG L+ + ++ + F ++ I A VI D SG +KGYGFV F + R+A
Sbjct: 15 VFVGGLAWETHKETMKKHF-EQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 32.3 bits (70), Expect = 0.13
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 231
V+VG L+ + ++ + F ++ I A VI D SG +KGYGFV F + R+A
Sbjct: 15 VFVGGLAWETHKETMKKHF-EQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 32.3 bits (70), Expect = 0.13
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 231
V+VG L+ + ++ + F ++ I A VI D SG +KGYGFV F + R+A
Sbjct: 15 VFVGGLAWETHKETMKKHF-EQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 32.3 bits (70), Expect = 0.13
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVRFGNEDEQRNAL 234
V+VG L+ + + R F ++ I A +I D + G +KGYGFV F + D A+
Sbjct: 19 VFVGGLAWETPTDEMRRYF-DQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAV 75
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 31.9 bits (69), Expect = 0.17
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 231
+++VG LS + +L V SKY IK +++ +G ++GYGFV + E E A
Sbjct: 65 TLFVGRLSHHTTEDTLREVM-SKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRA 121
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 31.9 bits (69), Expect = 0.17
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYA 240
++V LS + L FAS + + A+VI D +SG +KG+GFV + ++ A
Sbjct: 36 LFVSGLSRLTTNEKLQDAFAS-FGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 241 MN 246
MN
Sbjct: 95 MN 96
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 31.5 bits (68), Expect = 0.22
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNAL 234
+++V D +L F S Y I+ V++D ++G KGYGFV F R AL
Sbjct: 409 NIFVRGFGWDTTQENLKTAFES-YGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREAL 466
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 31.1 bits (67), Expect = 0.30
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 243
++V L+ + VF S+Y I+ + LD+ +GY FV+F ++ A+ A+
Sbjct: 209 LYVRCLNKQTTKMEVNEVF-SRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267
Query: 244 NGYCGL--GTKPLKICTAVPK 300
NG + +PL + A PK
Sbjct: 268 NGLFTIRGSDQPLIVRFADPK 288
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 30.7 bits (66), Expect = 0.39
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+++VG+L D+ + + +F SKY + ++ L GY FV F + + +A+Y
Sbjct: 8 TIYVGNLPGDIREREVEDLF-SKYGPV--VQIDLKIPPRPPGYAFVEFEDARDADDAIYG 64
Query: 241 MNGY 252
+GY
Sbjct: 65 RDGY 68
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 30.7 bits (66), Expect = 0.39
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+++VG+L D+ + + +F SKY + ++ L GY FV F + + +A+Y
Sbjct: 8 TIYVGNLPGDIREREVEDLF-SKYGPV--VQIDLKIPPRPPGYAFVEFEDARDADDAIYG 64
Query: 241 MNGY 252
+GY
Sbjct: 65 RDGY 68
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 30.3 bits (65), Expect = 0.52
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTK----GYGFVRFGNEDEQRN 228
+++VG+LSP VD+ L R F ++ I + K++ + K GFV F N + +
Sbjct: 180 NLYVGNLSPKVDENFLLRTF-GRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQA 238
Query: 229 ALYAMNG 249
A M G
Sbjct: 239 AKDEMQG 245
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 30.3 bits (65), Expect = 0.52
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +1
Query: 58 FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVIL-DNSGYTKGYGFVRFGNEDEQRNAL 234
F+++V +L+ + L F + ++ + +VI +N + GYGFV F + + AL
Sbjct: 189 FNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAAL 248
Query: 235 YAMNGYCGLGTKPLKI 282
G LG +P+++
Sbjct: 249 IEFQGKDFLG-RPIRL 263
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 30.3 bits (65), Expect = 0.52
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+V+VG+L D+ + + +F SKY + ++ L GY FV F + + +A++
Sbjct: 8 TVYVGNLPGDIREREVEDLF-SKYGPV--VQIDLKVPPRPPGYAFVEFDDARDAEDAIHG 64
Query: 241 MNGY 252
+GY
Sbjct: 65 RDGY 68
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 30.3 bits (65), Expect = 0.52
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+V+VG+L D+ + + +F SKY + ++ L GY FV F + + +A++
Sbjct: 8 TVYVGNLPGDIREREVEDLF-SKYGPV--VQIDLKVPPRPPGYAFVEFDDARDAEDAIHG 64
Query: 241 MNGY 252
+GY
Sbjct: 65 RDGY 68
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 30.3 bits (65), Expect = 0.52
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+V+VG+L D+ + + +F SKY + ++ L GY FV F + + +A++
Sbjct: 8 TVYVGNLPGDIREREVEDLF-SKYGPV--VQIDLKVPPRPPGYAFVEFDDARDAEDAIHG 64
Query: 241 MNGY 252
+GY
Sbjct: 65 RDGY 68
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 29.9 bits (64), Expect = 0.69
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNAL 234
V++G L DV + L R + I +++ D +SG +KGY FV F +D + A+
Sbjct: 118 VFIGGLPRDVGEEDL-RDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 29.5 bits (63), Expect = 0.91
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 64 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVRFGN 210
+++G +S D D+ L F KY + A ++ D + G +G+GF+ F +
Sbjct: 17 LFIGGISWDTDEERLQEYFG-KYGDLVEAVIMRDRTTGRARGFGFIVFAD 65
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 28.7 bits (61), Expect = 1.6
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 106 LYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYAMNG 249
LY +FA KY + + D +G ++G+ FVR+ +DE A+ ++G
Sbjct: 32 LYPLFA-KYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDG 79
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 28.7 bits (61), Expect = 1.6
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 106 LYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYAMNG 249
LY +FA KY + + D +G ++G+ FVR+ +DE A+ ++G
Sbjct: 32 LYPLFA-KYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDG 79
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 151 KVILDN-SGYTKGYGFVRFGNEDEQRNALYAMNG 249
K+I+D S +KGY F+ + E+ AL MNG
Sbjct: 312 KIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNG 345
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 28.7 bits (61), Expect = 1.6
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 151 KVILDNSGYTKGYGFVRFGNEDEQRNALYAMNG-YCGLGTKPLKICTAVPKP 303
++I++++G G GFV F + E NAL G Y G LK P P
Sbjct: 213 RLIVNHTGKHVGKGFVEFASAKEAENALEKKKGEYLQDGEIFLKAANIAPFP 264
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 118 FASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYAMNGY 252
F S++ ++K +V + +G +K +GF++F + + A AMN Y
Sbjct: 79 FFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDY 124
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 28.3 bits (60), Expect = 2.1
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 237
S+ V +L D L R F ++ +K + D +G +G+GF++F + + A +
Sbjct: 38 SLLVRNLRHDCRQEDLRRPF-EQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKH 96
Query: 238 AMNGYCGLG 264
M+GY LG
Sbjct: 97 QMDGYLLLG 105
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 28.3 bits (60), Expect = 2.1
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Frame = +1
Query: 25 ETRANMQHER----EFSVWVGDLSPDVDDYSLYRVF--ASKYTSIKTAKVILDNSGYTKG 186
E ++ HER EF ++VG L + L +VF + T ++ K + +KG
Sbjct: 199 EEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILK--NPQTKKSKG 256
Query: 187 YGFVRFGNEDEQRNAL 234
F+RF ++ + A+
Sbjct: 257 SAFLRFATVEQAKRAV 272
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 27.9 bits (59), Expect = 2.8
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNAL 234
+++V L D +L F Y I V++D ++G KG+GFV F R AL
Sbjct: 164 NIFVRGLGWDTTHENLKAAF-EVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAAL 221
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 169 SGYTKGYGFVRFGNEDEQRNALYAMNGYCGLG 264
+G +G+GFV+F + + +A + M+GY LG
Sbjct: 73 TGDPRGFGFVQFMDPADAADAKHHMDGYLLLG 104
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 28 TRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRF 204
++ N R ++VG+L+ L R F ++ + A V+ + G +KGYGF+ F
Sbjct: 2 SQTNNHDTRVTKIFVGNLTWRTTADDLRRYF-EQFGQVVDANVVSETYPGRSKGYGFITF 60
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 27.1 bits (57), Expect = 4.8
Identities = 19/89 (21%), Positives = 42/89 (47%)
Frame = +1
Query: 43 QHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQ 222
++ E ++WV +L + + L+ +F+S Y I+ + + + ++ F + +
Sbjct: 290 ENSSEGALWVNNLDSSISNEELHGIFSS-YGEIREVRRTMHENSQV----YIEFFDVRKA 344
Query: 223 RNALYAMNGYCGLGTKPLKICTAVPKPKS 309
+ AL +NG G + LK+ P+ S
Sbjct: 345 KVALQGLNGLEVAG-RQLKLAPTCPEGTS 372
>At4g33890.2 68417.m04809 expressed protein
Length = 342
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 139 IKTAKVILDNSGYTKGYGFVRFGNEDEQRNA 231
IK A + KG FVRFGN D ++N+
Sbjct: 72 IKNACIAKSPPFIKKGGSFVRFGNGDSKKNS 102
>At4g33890.1 68417.m04808 expressed protein
Length = 342
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 139 IKTAKVILDNSGYTKGYGFVRFGNEDEQRNA 231
IK A + KG FVRFGN D ++N+
Sbjct: 72 IKNACIAKSPPFIKKGGSFVRFGNGDSKKNS 102
>At3g48210.1 68416.m05260 expressed protein
Length = 315
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 117 HSIKRVIINVRA*VSNPNREFSFMLHIGS 31
H +K N+ A P REFSF +H G+
Sbjct: 170 HGVKFTFTNIDA--KRPTREFSFTVHYGN 196
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 27.1 bits (57), Expect = 4.8
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
++WVG L+P+ + L +F +Y I V ++G+ F+ + + +E A A
Sbjct: 19 NLWVGSLTPETTESDLTELF-GRYGDIDRITVY-----SSRGFAFIYYRHVEEAVAAKEA 72
Query: 241 MNGYCGLGTKPL 276
+ G GT L
Sbjct: 73 LQGANLNGTNEL 84
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 27.1 bits (57), Expect = 4.8
Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +1
Query: 7 LNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTK 183
L+T S + + + ++V LS + +L F ++ ++ +++D + K
Sbjct: 60 LSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTF-EQFGNLIHMNMVMDKVANRPK 118
Query: 184 GYGFVRFGNEDEQRNALYAMNG 249
G+ F+R+ E+E A+ M+G
Sbjct: 119 GFAFLRYETEEEAMKAIQGMHG 140
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 26.6 bits (56), Expect = 6.4
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 130 YTSIKTAKVILDNS-GYTKGYGFVRFGNEDEQRNAL 234
Y I+ V++D + G KG+GFV F + AL
Sbjct: 127 YGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 26.6 bits (56), Expect = 6.4
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 130 YTSIKTAKVILDNS-GYTKGYGFVRFGNEDEQRNAL 234
Y I+ V++D + G KG+GFV F + AL
Sbjct: 127 YGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 26.6 bits (56), Expect = 6.4
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +1
Query: 61 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 240
+++VG+L D+ + +F KY I + L GY FV F + + +A+Y
Sbjct: 8 TIYVGNLPGDIRKCEVEDLFY-KYGPI--VDIDLKIPPRPPGYAFVEFEDPRDADDAIYG 64
Query: 241 MNGY 252
+GY
Sbjct: 65 RDGY 68
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.135 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,027,481
Number of Sequences: 28952
Number of extensions: 151785
Number of successful extensions: 537
Number of sequences better than 10.0: 131
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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