Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313D01f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23) 172 2e-43
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 31 0.76
SB_52932| Best HMM Match : Ank (HMM E-Value=0) 30 1.3
SB_10243| Best HMM Match : Ank (HMM E-Value=0) 30 1.3
SB_52306| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 28 5.4
SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_25243| Best HMM Match : Protamine_P1 (HMM E-Value=5.7) 27 7.1
SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18) 27 7.1
SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022) 27 9.4
SB_49550| Best HMM Match : SSXT (HMM E-Value=5.5) 27 9.4
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012) 27 9.4
>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
Length = 145
Score = 172 bits (418), Expect = 2e-43
Identities = 80/102 (78%), Positives = 92/102 (90%)
Frame = +1
Query: 1 GSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKK 180
G++G KFRI+LGLPVGAVINCADNTG KNLY+IAV+GIKGRLNRLPAA SGDM++ATVKK
Sbjct: 27 GTSGGKFRIALGLPVGAVINCADNTGGKNLYIIAVKGIKGRLNRLPAAASGDMVLATVKK 86
Query: 181 GKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK 306
GKPELRKKVMPAVVIRQRK +RR++GVF+YFE N V V +
Sbjct: 87 GKPELRKKVMPAVVIRQRKAYRRKNGVFLYFEANIKVRVRKQ 128
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 30.7 bits (66), Expect = 0.76
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -3
Query: 180 LFDCGHNHVPGTGRRQSVQATFDTLDCDHIQILCPCVVGA 61
L DC V G RQ +A F +DC+H CPC+ GA
Sbjct: 297 LCDCRVPGVTGVTCRQPCRAGFFGIDCNH---KCPCMNGA 333
>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
Length = 1266
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 37 LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 129
L +GA ++CADN G L +A QG +N
Sbjct: 913 LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 943
>SB_10243| Best HMM Match : Ank (HMM E-Value=0)
Length = 475
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 37 LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 129
L +GA ++CADN G L +A QG +N
Sbjct: 109 LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 139
>SB_52306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 66 RQHRGKESVCDRSPRYQRSPEQTAGGRFRGHDCGHSQKG*T*TPEKGNAGSGHQ 227
+QHRG R Q SPE+ G H G+ ++G +PEK + GS H+
Sbjct: 14 KQHRGSVHKRGNGERGQGSPEKQHRGSV--HKRGNGERG-QGSPEKQHRGSVHK 64
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 66 RQHRGKESVCDRSPRYQRSPEQTAGGRFRGHDCGHSQKG*T*TPEKGNAGSGHQ 227
+QHRG R Q SPE+ G H G+ ++G +PEK + GS H+
Sbjct: 35 KQHRGSVHKRGNGERGQGSPEKQHRGSV--HKRGNGERG-QGSPEKQHRGSVHK 85
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 66 RQHRGKESVCDRSPRYQRSPEQTAGGRFRGHDCGHSQKG*T*TPEKGNAGSGHQ 227
+QHRG R Q SPE+ G H G+ ++G +PEK GS H+
Sbjct: 56 KQHRGSVHKRGNGERGQGSPEKQHRGSV--HKRGNGERG-QGSPEKQQRGSVHK 106
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 321 ALHFALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 190
A FA+ Y R L Y+Y TPS+ F D CR L FP F
Sbjct: 3671 ASRFAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 3714
>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1662
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +3
Query: 30 PGSPSGSSNQLRRQHRGKESVCDRSPRYQRSPEQTAGGRFRGHDCG 167
P S SS+ R +H+GK S RSP T G HD G
Sbjct: 107 PNPASLSSHSRRERHQGKGSPMSSPAMRPRSPMVTPGSH-SNHDAG 151
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +3
Query: 33 GSPSGSSNQLRRQH--RGKESVCDRSPRYQRSPEQTAGGRFRGH 158
G P G Q + H RG + DR PR S T+GG GH
Sbjct: 306 GPPDGPHGQRMQHHDIRGPDPRGDRGPRGPPSGVPTSGGPPPGH 349
>SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 312 FALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 190
FA+ Y R L Y+Y TPS+ F D CR L FP F
Sbjct: 2 FAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 42
>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 30 PG-SPSGSSNQLRRQHRGKESVCDRSPR 110
PG S S SS +R+HR + V D+ PR
Sbjct: 804 PGDSDSSSSRDRKRKHRHNDDVTDKKPR 831
>SB_25243| Best HMM Match : Protamine_P1 (HMM E-Value=5.7)
Length = 201
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 362 CGRVLPQTRAL*LEYTFKISSC 427
CGR +P RA+ +Y K S C
Sbjct: 139 CGRAIPTLRAMRAQYELKASEC 160
>SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 81 CPCVVGAVDYCSHWETQGDT 22
CP VVG V+ CS W T
Sbjct: 343 CPAVVGVVEACSSWAVLAKT 362
>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
Length = 593
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 344 ATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTAGIT 204
AT V A + L T+ PAL++K+IN +R N + L+ +T
Sbjct: 186 ATSMVTAPTSKTSLTTTLRPALTAKHINITNRTANVVKKLIKIGLLT 232
>SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022)
Length = 192
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -3
Query: 321 ALHFALVIDYDTRIVLKVYK-YSITPSE 241
AL FAL + YDT+I++ K YSI+P E
Sbjct: 137 ALLFALYLVYDTQIMMGGGKMYSISPEE 164
>SB_49550| Best HMM Match : SSXT (HMM E-Value=5.5)
Length = 283
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 434 LSFPSTSKSNPKNYNLRNRHLQCK 505
L+ P+T SN K+ N++ R QCK
Sbjct: 194 LAAPNTGMSNTKHRNVKVRSFQCK 217
>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
Length = 1225
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 167 ATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITA 48
AT S + A+ SL PW+ T+R P +SA+ TA
Sbjct: 816 ATSRSGDSASRSLTNLGCYPWSKQTFRHEGPPISARPCTA 855
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,258,351
Number of Sequences: 59808
Number of extensions: 353069
Number of successful extensions: 850
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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