BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313D01f (521 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal prot... 229 9e-61 Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical pr... 28 3.5 AL161712-21|CAC70129.2| 729|Caenorhabditis elegans Hypothetical... 28 3.5 Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical pr... 28 4.7 Z75541-6|CAA99857.2| 644|Caenorhabditis elegans Hypothetical pr... 28 4.7 U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical pr... 28 4.7 AF440800-1|AAL28139.1| 644|Caenorhabditis elegans transcription... 28 4.7 U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p... 27 8.1 M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related... 27 8.1 >U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal protein, large subunitprotein 23 protein. Length = 140 Score = 229 bits (560), Expect = 9e-61 Identities = 106/124 (85%), Positives = 116/124 (93%) Frame = +1 Query: 1 GSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKK 180 G++GAKFRISLGLPVGAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM V +VKK Sbjct: 8 GASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKK 67 Query: 181 GKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECAD 360 GKPELRKKV+ VVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECAD Sbjct: 68 GKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECAD 127 Query: 361 LWPR 372 LWPR Sbjct: 128 LWPR 131 >Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical protein F47G4.8 protein. Length = 188 Score = 28.3 bits (60), Expect = 3.5 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = -3 Query: 429 TQLLILNVYSSYRARV*GNTRPQISTFFGYRPCDGRALHFALVI 298 T LL ++ S RAR+ P + F YRPC R L + ++ Sbjct: 80 TTLLGNSIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123 >AL161712-21|CAC70129.2| 729|Caenorhabditis elegans Hypothetical protein Y66D12A.5 protein. Length = 729 Score = 28.3 bits (60), Expect = 3.5 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Frame = +1 Query: 31 LGLPVGAVINC-ADNTGAKNLYVIAVQG---IKGRLNRLPAAGSGDMIVATVKKGKPELR 198 L L G V C +D KN + + G + G+LNR M+ +T K +L Sbjct: 453 LNLSPGTVRKCYSDWLNRKNAEIQSGSGEIRVSGQLNRANPDEYLHMLNSTFLKNFEKLS 512 Query: 199 KKVM-PAVVIRQRKPFRRRDGVFIYFEDN 282 V P +RK +RD F Y+ED+ Sbjct: 513 NLVQEPPRRSLKRKRVSQRDANFYYYEDD 541 >Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical protein T23D5.9 protein. Length = 354 Score = 27.9 bits (59), Expect = 4.7 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -3 Query: 297 DYDTRIVLKVYKYSITPSERFPL 229 DY + V K+Y YSIT RFP+ Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184 >Z75541-6|CAA99857.2| 644|Caenorhabditis elegans Hypothetical protein F52B5.5a protein. Length = 644 Score = 27.9 bits (59), Expect = 4.7 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +2 Query: 398 LEYTFKISSCVLLSFPSTSKSNPKNYNLRNRHL 496 LE F +++ PSTS S+P N N R R L Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFL 477 >U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical protein W03B1.2 protein. Length = 814 Score = 27.9 bits (59), Expect = 4.7 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = -1 Query: 140 AGSLFRRPLIPWTAITYRFFAPVLSAQLITA 48 A LFR ++P+ TY F +L L+TA Sbjct: 562 ASCLFRSTIMPFVVFTYIFVTGILLVNLLTA 592 >AF440800-1|AAL28139.1| 644|Caenorhabditis elegans transcription factor CEP-1 protein. Length = 644 Score = 27.9 bits (59), Expect = 4.7 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +2 Query: 398 LEYTFKISSCVLLSFPSTSKSNPKNYNLRNRHL 496 LE F +++ PSTS S+P N N R R L Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFL 477 >U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated protein 104, isoforma protein. Length = 1584 Score = 27.1 bits (57), Expect = 8.1 Identities = 18/41 (43%), Positives = 19/41 (46%) Frame = +3 Query: 33 GSPSGSSNQLRRQHRGKESVCDRSPRYQRSPEQTAGGRFRG 155 GS SGS +RRQ R V D S Y R E R RG Sbjct: 1250 GSDSGSPGAIRRQRR----VLDTSSAYVRGEENLGQWRPRG 1286 >M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related protein protein. Length = 1584 Score = 27.1 bits (57), Expect = 8.1 Identities = 18/41 (43%), Positives = 19/41 (46%) Frame = +3 Query: 33 GSPSGSSNQLRRQHRGKESVCDRSPRYQRSPEQTAGGRFRG 155 GS SGS +RRQ R V D S Y R E R RG Sbjct: 1250 GSDSGSPGAIRRQRR----VLDTSSAYVRGEENLGQWRPRG 1286 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,780,335 Number of Sequences: 27780 Number of extensions: 254938 Number of successful extensions: 720 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 699 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 720 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1017709248 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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