Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313D01f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal prot... 229 9e-61
Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical pr... 28 3.5
AL161712-21|CAC70129.2| 729|Caenorhabditis elegans Hypothetical... 28 3.5
Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z75541-6|CAA99857.2| 644|Caenorhabditis elegans Hypothetical pr... 28 4.7
U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical pr... 28 4.7
AF440800-1|AAL28139.1| 644|Caenorhabditis elegans transcription... 28 4.7
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p... 27 8.1
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related... 27 8.1
>U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 23 protein.
Length = 140
Score = 229 bits (560), Expect = 9e-61
Identities = 106/124 (85%), Positives = 116/124 (93%)
Frame = +1
Query: 1 GSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKK 180
G++GAKFRISLGLPVGAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM V +VKK
Sbjct: 8 GASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKK 67
Query: 181 GKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECAD 360
GKPELRKKV+ VVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECAD
Sbjct: 68 GKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECAD 127
Query: 361 LWPR 372
LWPR
Sbjct: 128 LWPR 131
>Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical
protein F47G4.8 protein.
Length = 188
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 429 TQLLILNVYSSYRARV*GNTRPQISTFFGYRPCDGRALHFALVI 298
T LL ++ S RAR+ P + F YRPC R L + ++
Sbjct: 80 TTLLGNSIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123
>AL161712-21|CAC70129.2| 729|Caenorhabditis elegans Hypothetical
protein Y66D12A.5 protein.
Length = 729
Score = 28.3 bits (60), Expect = 3.5
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = +1
Query: 31 LGLPVGAVINC-ADNTGAKNLYVIAVQG---IKGRLNRLPAAGSGDMIVATVKKGKPELR 198
L L G V C +D KN + + G + G+LNR M+ +T K +L
Sbjct: 453 LNLSPGTVRKCYSDWLNRKNAEIQSGSGEIRVSGQLNRANPDEYLHMLNSTFLKNFEKLS 512
Query: 199 KKVM-PAVVIRQRKPFRRRDGVFIYFEDN 282
V P +RK +RD F Y+ED+
Sbjct: 513 NLVQEPPRRSLKRKRVSQRDANFYYYEDD 541
>Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical
protein T23D5.9 protein.
Length = 354
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 297 DYDTRIVLKVYKYSITPSERFPL 229
DY + V K+Y YSIT RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184
>Z75541-6|CAA99857.2| 644|Caenorhabditis elegans Hypothetical
protein F52B5.5a protein.
Length = 644
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 398 LEYTFKISSCVLLSFPSTSKSNPKNYNLRNRHL 496
LE F +++ PSTS S+P N N R R L
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFL 477
>U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical
protein W03B1.2 protein.
Length = 814
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 140 AGSLFRRPLIPWTAITYRFFAPVLSAQLITA 48
A LFR ++P+ TY F +L L+TA
Sbjct: 562 ASCLFRSTIMPFVVFTYIFVTGILLVNLLTA 592
>AF440800-1|AAL28139.1| 644|Caenorhabditis elegans transcription
factor CEP-1 protein.
Length = 644
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 398 LEYTFKISSCVLLSFPSTSKSNPKNYNLRNRHL 496
LE F +++ PSTS S+P N N R R L
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFL 477
>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
protein 104, isoforma protein.
Length = 1584
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/41 (43%), Positives = 19/41 (46%)
Frame = +3
Query: 33 GSPSGSSNQLRRQHRGKESVCDRSPRYQRSPEQTAGGRFRG 155
GS SGS +RRQ R V D S Y R E R RG
Sbjct: 1250 GSDSGSPGAIRRQRR----VLDTSSAYVRGEENLGQWRPRG 1286
>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
protein protein.
Length = 1584
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/41 (43%), Positives = 19/41 (46%)
Frame = +3
Query: 33 GSPSGSSNQLRRQHRGKESVCDRSPRYQRSPEQTAGGRFRG 155
GS SGS +RRQ R V D S Y R E R RG
Sbjct: 1250 GSDSGSPGAIRRQRR----VLDTSSAYVRGEENLGQWRPRG 1286
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,780,335
Number of Sequences: 27780
Number of extensions: 254938
Number of successful extensions: 720
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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