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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313D01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   229   9e-61
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical...    28   3.5  
Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    28   4.7  
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    27   8.1  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    27   8.1  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  229 bits (560), Expect = 9e-61
 Identities = 106/124 (85%), Positives = 116/124 (93%)
 Frame = +1

Query: 1   GSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKK 180
           G++GAKFRISLGLPVGAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM V +VKK
Sbjct: 8   GASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKK 67

Query: 181 GKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECAD 360
           GKPELRKKV+  VVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECAD
Sbjct: 68  GKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECAD 127

Query: 361 LWPR 372
           LWPR
Sbjct: 128 LWPR 131


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 429 TQLLILNVYSSYRARV*GNTRPQISTFFGYRPCDGRALHFALVI 298
           T LL  ++  S RAR+     P +  F  YRPC  R L +  ++
Sbjct: 80  TTLLGNSIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123


>AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical
           protein Y66D12A.5 protein.
          Length = 729

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
 Frame = +1

Query: 31  LGLPVGAVINC-ADNTGAKNLYVIAVQG---IKGRLNRLPAAGSGDMIVATVKKGKPELR 198
           L L  G V  C +D    KN  + +  G   + G+LNR        M+ +T  K   +L 
Sbjct: 453 LNLSPGTVRKCYSDWLNRKNAEIQSGSGEIRVSGQLNRANPDEYLHMLNSTFLKNFEKLS 512

Query: 199 KKVM-PAVVIRQRKPFRRRDGVFIYFEDN 282
             V  P     +RK   +RD  F Y+ED+
Sbjct: 513 NLVQEPPRRSLKRKRVSQRDANFYYYEDD 541


>Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical
           protein T23D5.9 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 297 DYDTRIVLKVYKYSITPSERFPL 229
           DY +  V K+Y YSIT   RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184


>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 398 LEYTFKISSCVLLSFPSTSKSNPKNYNLRNRHL 496
           LE  F +++      PSTS S+P N N R R L
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFL 477


>U58753-1|AAC24437.2|  814|Caenorhabditis elegans Hypothetical
           protein W03B1.2 protein.
          Length = 814

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 140 AGSLFRRPLIPWTAITYRFFAPVLSAQLITA 48
           A  LFR  ++P+   TY F   +L   L+TA
Sbjct: 562 ASCLFRSTIMPFVVFTYIFVTGILLVNLLTA 592


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 398 LEYTFKISSCVLLSFPSTSKSNPKNYNLRNRHL 496
           LE  F +++      PSTS S+P N N R R L
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFL 477


>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
            protein 104, isoforma protein.
          Length = 1584

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/41 (43%), Positives = 19/41 (46%)
 Frame = +3

Query: 33   GSPSGSSNQLRRQHRGKESVCDRSPRYQRSPEQTAGGRFRG 155
            GS SGS   +RRQ R    V D S  Y R  E     R RG
Sbjct: 1250 GSDSGSPGAIRRQRR----VLDTSSAYVRGEENLGQWRPRG 1286


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
            protein protein.
          Length = 1584

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/41 (43%), Positives = 19/41 (46%)
 Frame = +3

Query: 33   GSPSGSSNQLRRQHRGKESVCDRSPRYQRSPEQTAGGRFRG 155
            GS SGS   +RRQ R    V D S  Y R  E     R RG
Sbjct: 1250 GSDSGSPGAIRRQRR----VLDTSSAYVRGEENLGQWRPRG 1286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,780,335
Number of Sequences: 27780
Number of extensions: 254938
Number of successful extensions: 720
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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