Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313D01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    27   0.088
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    27   0.15 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.62 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.62 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.62 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   3.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 27.5 bits (58), Expect = 0.088
 Identities = 12/55 (21%), Positives = 21/55 (38%)
 Frame = -3

Query: 222 DHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQATFDTLDCDHIQILCPCVVGAV 58
           D C  Y +    +T  DCG    P   +R   Q   + +  +    + P V+  +
Sbjct: 471 DQCEEYEYVHDEYTCMDCGPGKWPHEDKRGCYQLAINHIRWNSAFAIAPAVISCL 525


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 12/55 (21%), Positives = 21/55 (38%)
 Frame = -3

Query: 222 DHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQATFDTLDCDHIQILCPCVVGAV 58
           D C  Y +    +T  DCG    P   +R   Q   + +  +    + P V+  +
Sbjct: 561 DQCEEYEYVYDEYTCMDCGPGKWPHEDKRGCYQLAINHIRWNSAFAIAPAVISCL 615


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 378 LKRELYSLNIRLRLVAAFYFPFLVHQNQTRKIIICVIDIYN 500
           L+  +++L + +  V +F F      +  R   ICV +IY+
Sbjct: 3   LRCNIWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVPEIYS 43


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 378 LKRELYSLNIRLRLVAAFYFPFLVHQNQTRKIIICVIDIYN 500
           L+  +++L + +  V +F F      +  R   ICV +IY+
Sbjct: 3   LRCNIWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVPEIYS 43


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 378 LKRELYSLNIRLRLVAAFYFPFLVHQNQTRKIIICVIDIYN 500
           L+  +++L + +  V +F F      +  R   ICV +IY+
Sbjct: 3   LRCNIWTLAVNVLFVNSFLFVIAAQDSSGRIFTICVPEIYS 43


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 404 YTFKISSCVLLSFPSTSKSNPKNYNLRNRHLQCKCAKLK 520
           YT  +++ ++L  P T  +   +  LRN      CA +K
Sbjct: 654 YTANLAAFLVLERPKTKLTGINDARLRNTMENLTCATVK 692


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 33   GSPSGS-SNQLRRQHRGKESVCDRSPRYQRSPEQTAG 140
            G P G  +N       G +S+  ++ RY R P Q  G
Sbjct: 1760 GPPVGHPTNASAHSRSGSQSMPRQNGRYSRVPSQGGG 1796


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 146 VPGT*LWPQSKRVNLNSGKR--*CRQWSSGSGNRS 244
           +P T LW ++ R+ +++ K+    + WS  S N +
Sbjct: 439 IPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNA 473


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 200  FRSSGLPFLTVATIMSPEPAAGSLFRRPLIP 108
            F  S +PF++   I++  P +     RP+IP
Sbjct: 1034 FHYSVVPFVSNHDILNLRPLSMEKGTRPMIP 1064


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,498
Number of Sequences: 438
Number of extensions: 3276
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)