BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313C12f (391 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 27 0.77 SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 2.4 SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po... 25 4.1 SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 24 7.2 SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 24 7.2 SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 24 9.5 SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 24 9.5 SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 24 9.5 >SPAC23C11.17 |||mitochondrial inner membrane protein involved in potassium ion transport|Schizosaccharomyces pombe|chr 1|||Manual Length = 485 Score = 27.5 bits (58), Expect = 0.77 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -3 Query: 131 QYTNHLPCGTDPLVRWNLFHR 69 +Y N GTDPL+R+N+ HR Sbjct: 295 RYMNLNAFGTDPLLRYNIRHR 315 >SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1236 Score = 25.8 bits (54), Expect = 2.4 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = -1 Query: 259 FSAVLPT--SGLFYGHSVTAFDSVFLLLRTESSFGSDIRWTILSHSTQTTFPAA 104 FS+ + T SG+ + F SV +L + +S S +I S ST +TF +A Sbjct: 553 FSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSA 606 >SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces pombe|chr 1|||Manual Length = 213 Score = 25.0 bits (52), Expect = 4.1 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +2 Query: 68 FCEIDSIEQEDPCRREGGLC 127 FC +DS+ E P +E GLC Sbjct: 129 FCVVDSVAVESPA-QEAGLC 147 >SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces pombe|chr 2|||Manual Length = 586 Score = 24.2 bits (50), Expect = 7.2 Identities = 15/46 (32%), Positives = 19/46 (41%) Frame = -2 Query: 198 PSFCCLGQSPVLALISDGQS*ATVHKPPSLRHGSSCSMESISQKSS 61 PS +G L DG T LRH S E++SQ +S Sbjct: 426 PSVPLMGTDQPLENYHDGNGEQTEECLRDLRHNQSQDFETVSQDTS 471 >SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1150 Score = 24.2 bits (50), Expect = 7.2 Identities = 8/15 (53%), Positives = 11/15 (73%) Frame = -2 Query: 264 KHSPPCFRHLVSFTD 220 +H P FRH+ S+TD Sbjct: 721 EHRPNAFRHMPSYTD 735 >SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 649 Score = 23.8 bits (49), Expect = 9.5 Identities = 12/36 (33%), Positives = 15/36 (41%) Frame = -2 Query: 174 SPVLALISDGQS*ATVHKPPSLRHGSSCSMESISQK 67 SP + +G H P HG S S +I QK Sbjct: 569 SPAHIMYPEGSPGFIQHSPNGFTHGHSASPVNIGQK 604 >SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1367 Score = 23.8 bits (49), Expect = 9.5 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = +2 Query: 2 VIMKFLLFFAMCI 40 +I+ FLL FAMC+ Sbjct: 487 IILNFLLLFAMCL 499 >SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1087 Score = 23.8 bits (49), Expect = 9.5 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -2 Query: 126 HKPPSLRHGSSCSMESISQKSSS 58 H+ +HG++ ES SQKSS+ Sbjct: 400 HRNHEAKHGNTVQNESKSQKSSN 422 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,623,928 Number of Sequences: 5004 Number of extensions: 33765 Number of successful extensions: 96 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 96 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 128029482 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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