Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313C12f
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    27   0.77 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   2.4  
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po...    25   4.1  
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    24   7.2  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    24   7.2  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    24   9.5  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    24   9.5  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    24   9.5  

>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 27.5 bits (58), Expect = 0.77
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 131 QYTNHLPCGTDPLVRWNLFHR 69
           +Y N    GTDPL+R+N+ HR
Sbjct: 295 RYMNLNAFGTDPLLRYNIRHR 315


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 259 FSAVLPT--SGLFYGHSVTAFDSVFLLLRTESSFGSDIRWTILSHSTQTTFPAA 104
           FS+ + T  SG+      + F SV  +L + +S  S    +I S ST +TF +A
Sbjct: 553 FSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSA 606


>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 213

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 68  FCEIDSIEQEDPCRREGGLC 127
           FC +DS+  E P  +E GLC
Sbjct: 129 FCVVDSVAVESPA-QEAGLC 147


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -2

Query: 198 PSFCCLGQSPVLALISDGQS*ATVHKPPSLRHGSSCSMESISQKSS 61
           PS   +G    L    DG    T      LRH  S   E++SQ +S
Sbjct: 426 PSVPLMGTDQPLENYHDGNGEQTEECLRDLRHNQSQDFETVSQDTS 471


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 264 KHSPPCFRHLVSFTD 220
           +H P  FRH+ S+TD
Sbjct: 721 EHRPNAFRHMPSYTD 735


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -2

Query: 174 SPVLALISDGQS*ATVHKPPSLRHGSSCSMESISQK 67
           SP   +  +G      H P    HG S S  +I QK
Sbjct: 569 SPAHIMYPEGSPGFIQHSPNGFTHGHSASPVNIGQK 604


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 2   VIMKFLLFFAMCI 40
           +I+ FLL FAMC+
Sbjct: 487 IILNFLLLFAMCL 499


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 126 HKPPSLRHGSSCSMESISQKSSS 58
           H+    +HG++   ES SQKSS+
Sbjct: 400 HRNHEAKHGNTVQNESKSQKSSN 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,623,928
Number of Sequences: 5004
Number of extensions: 33765
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)