Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313C12f
(391 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 35 0.020
07_03_0831 - 21810002-21810319,21810423-21810573,21810660-218108... 30 0.75
07_01_0547 + 4052618-4052659,4055575-4055741,4055839-4056556,405... 29 1.3
10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496 29 1.7
04_03_0772 - 19438910-19439209,19439692-19439828,19441334-194415... 28 2.3
10_08_0915 + 21539651-21540226,21540276-21541139 27 4.0
09_06_0113 + 20938357-20938730,20938820-20939057,20939140-209392... 27 4.0
06_01_0244 - 1844161-1844241,1844356-1844394,1844510-1844617,184... 27 5.3
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 27 5.3
01_02_0099 + 11092529-11093140,11094153-11094424,11095378-110954... 27 5.3
12_02_1036 - 25587313-25587890,25589209-25589272,25589356-255894... 27 7.0
12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409... 27 7.0
06_03_0700 + 23650275-23650299,23650381-23652350 27 7.0
04_03_0923 + 20843477-20845044,20846081-20846996 27 7.0
03_02_0339 - 7623897-7625837 27 7.0
07_03_1434 + 26529043-26529927,26530385-26530742,26530820-265310... 26 9.2
05_07_0050 + 27332855-27333009,27333725-27333790,27333971-273340... 26 9.2
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 35.1 bits (77), Expect = 0.020
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 182 KQQKDGIECCYGVSVKETRCRKHGGECF-SKGYCSQS 289
K Q D ++ C S K+++C K ECF SK YCS+S
Sbjct: 452 KCQNDNVDSCKRCSCKKSKCLKLYCECFASKVYCSES 488
>07_03_0831 -
21810002-21810319,21810423-21810573,21810660-21810897,
21811011-21811221,21811336-21811559,21811696-21811806,
21813265-21813636,21813810-21814782
Length = 865
Score = 29.9 bits (64), Expect = 0.75
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 220 HSVTAFDSVFLLLRTESSFGSDIRWTILSHSTQTTFPAARILL 92
H++T D L++ + G+D+ W H T T P I L
Sbjct: 129 HTLTIRDDGNLVISGSDAAGTDVEWESFHHPTDTFVPGMEIAL 171
>07_01_0547 +
4052618-4052659,4055575-4055741,4055839-4056556,
4056678-4057114,4057241-4057315,4057490-4057673,
4057759-4057854,4057952-4058018,4058556-4058715,
4058808-4059199,4059254-4059300
Length = 794
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 194 DGIECCYGVSVKETRCRKHGGECFSKG-YCSQ 286
DG E C S K+++C K ECF+ G YCS+
Sbjct: 463 DG-EACKRCSCKKSKCLKLYCECFAAGVYCSE 493
>10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496
Length = 389
Score = 28.7 bits (61), Expect = 1.7
Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Frame = +2
Query: 83 SIEQEDPCRREGGLCTVAQDCPSDIRAKTGLCPKQQKDGIE----CCYGVSVKETRCRKH 250
S+ C G + CP+++RA G + D CC G + CR
Sbjct: 165 SLTSAATCAAAGCAADLNAMCPAELRAGGGAACRSACDAFGRPEFCCSGAFANPSTCRPT 224
Query: 251 GGECFSKGYCSQSLIYEEASDCPEGNDCC 337
K C +S Y A D P C
Sbjct: 225 AYSQVFKSACPRS--YSYAFDDPTSTFTC 251
>04_03_0772 -
19438910-19439209,19439692-19439828,19441334-19441570,
19441948-19442149,19442761-19442858,19443082-19443665,
19443725-19443882
Length = 571
Score = 28.3 bits (60), Expect = 2.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 29 AMCILVYGNSEDDFCEIDSIEQEDPC 106
A C+ V G S DD CE ++ +D C
Sbjct: 83 AACLGVIGGSGDDLCEKAAVRYDDRC 108
>10_08_0915 + 21539651-21540226,21540276-21541139
Length = 479
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = -1
Query: 253 AVLPTSGLFYGHSVT----AFDSVFLLLRTESSFG 161
AV +G+FYG S + FDSVF L+ +G
Sbjct: 382 AVRAAAGMFYGTSTSPSAKCFDSVFFLMNPSPEYG 416
>09_06_0113 +
20938357-20938730,20938820-20939057,20939140-20939264,
20939682-20939715,20939804-20939850,20939948-20940079,
20940420-20940484,20940613-20940685,20940790-20940946
Length = 414
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 122 LCTVAQDCPSDIRAKTGLCPKQQKDGIECCYGVSV-KETRCRKHGGECFSK 271
+ +V Q + A G+C ++KDG+ C ++ K + C+ H + K
Sbjct: 212 VASVGQMMKMGVSADFGICKGKRKDGMGCTMAINKRKGSYCKFHSSKSSQK 262
>06_01_0244 -
1844161-1844241,1844356-1844394,1844510-1844617,
1844638-1844685,1845058-1845111,1845214-1845268,
1845442-1845522,1846238-1846615,1847196-1847401
Length = 349
Score = 27.1 bits (57), Expect = 5.3
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -2
Query: 204 SIPSFCCLGQSPVLALISDGQS*ATVHKPPSLRHGS 97
++PS CCL SP S VHKPP R GS
Sbjct: 125 AVPSGCCLSSSP--------GSVIWVHKPPEGRRGS 152
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 146 DNPEPQYTNHLPCGTDPLVRWN 81
D+PE Y NH P +DP+ WN
Sbjct: 244 DHPEC-YQNHFPMDSDPVRDWN 264
>01_02_0099 +
11092529-11093140,11094153-11094424,11095378-11095438,
11095553-11095622,11095645-11095901,11096466-11096639
Length = 481
Score = 27.1 bits (57), Expect = 5.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 83 SIEQEDPCRREGGLCTVAQDCPSD 154
S+E+ED C R GG VA DC D
Sbjct: 439 SMEKEDGCSRVGG--AVASDCVED 460
>12_02_1036 -
25587313-25587890,25589209-25589272,25589356-25589448,
25589533-25589683,25590474-25590539,25590594-25590907
Length = 421
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 176 CPKQQKDGIECCYGVSVKETRCRKHGGECFSKG-YCSQS 289
C ++ D E C S K+++C K CF+ G +CS+S
Sbjct: 103 CFWRKTDEGEGCKSCSCKKSKCLKLYCVCFASGSHCSES 141
>12_02_0370 +
18139557-18140469,18140561-18140704,18140804-18140956,
18141032-18141147,18141231-18141398,18142110-18142334,
18142458-18142577
Length = 612
Score = 26.6 bits (56), Expect = 7.0
Identities = 21/80 (26%), Positives = 38/80 (47%)
Frame = +3
Query: 93 KRIRAAGKVVCVLWLRIVHLISEPKLDSVLSSKKTESNAVTECP*KRPDVGSTAENVSRK 272
K+ A +V+C WL++ + LDS + S+ + +A+ + K+ + AEN+S +
Sbjct: 394 KKRLTAHEVLCHPWLQMSGSAPDKPLDSAVLSRLRQFSAMNKL--KKMALRVIAENLSEE 451
Query: 273 ATAVNL*YMKKLQTVPKGMI 332
A K + T G I
Sbjct: 452 EIAGLKEMFKMMDTDNSGQI 471
>06_03_0700 + 23650275-23650299,23650381-23652350
Length = 664
Score = 26.6 bits (56), Expect = 7.0
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Frame = +2
Query: 101 PCRREGGLCTVAQDCPSDIRAKT-GLCPKQQKDGIE----CCYGV-SVKETRCRKHGGEC 262
P + GL +AQ CP D++ T CP +G++ CC + SV C G +
Sbjct: 248 PLITDKGLAAIAQGCP-DLKVVTVEACPGVADEGLKAIGRCCAKLQSVNIKNCAHVGDQG 306
Query: 263 FSKGYCS 283
S CS
Sbjct: 307 VSGLVCS 313
>04_03_0923 + 20843477-20845044,20846081-20846996
Length = 827
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = -1
Query: 217 SVTAFDSVFLLLRT------ESSFGSDIRWTILSHSTQTTFPAARI 98
++TA D++ +LL SS S I W + T T FP+A+I
Sbjct: 123 NITAKDTIAILLNNGNLVLRSSSNSSIIFWQSFDYPTDTLFPSAKI 168
>03_02_0339 - 7623897-7625837
Length = 646
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/39 (25%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 81 IPSNKRIRAAGKVVCVLWL-RIVHLISEPKLDSVLSSKK 194
+P N+ + AG + +LW + H++ + ++D++L K
Sbjct: 596 VPENEELAQAGVLAVLLWASKQPHMVQDLRVDALLPDAK 634
>07_03_1434 +
26529043-26529927,26530385-26530742,26530820-26531007,
26531082-26531271,26531343-26531447,26531521-26531597,
26531628-26531972
Length = 715
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 341 KYNNHSLRDSLKLLHISKIDCSSLSRNILRRASDIWSLLRTLRN 210
K N H LRD + L S + S S+ + S + ++TL N
Sbjct: 515 KKNEHDLRDRIAELQESNFELSGSSKVQAAKISQLEKQIQTLEN 558
>05_07_0050 +
27332855-27333009,27333725-27333790,27333971-27334030,
27334425-27334515,27334893-27335073,27336037-27336128,
27336672-27336995
Length = 322
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = +2
Query: 104 CRREGG---LCTVAQDCPSDIRAKTGLC 178
CRR G CT+ Q+C D+ T +C
Sbjct: 158 CRRNGADKHFCTLMQNCRRDLMELTAVC 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,543,740
Number of Sequences: 37544
Number of extensions: 226378
Number of successful extensions: 680
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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