Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313C12f
(391 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4321| Best HMM Match : Ank (HMM E-Value=0) 34 0.036
SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 34 0.036
SB_8486| Best HMM Match : Granulin (HMM E-Value=0) 33 0.063
SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08) 31 0.25
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.58
SB_43368| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-37) 30 0.77
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 29 1.4
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 1.4
SB_52413| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_16910| Best HMM Match : EGF (HMM E-Value=0) 29 1.8
SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21) 29 1.8
SB_58982| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1) 28 2.4
SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096) 28 2.4
SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 27 4.1
SB_12157| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31) 27 5.4
SB_41673| Best HMM Match : Glyco_hydro_38 (HMM E-Value=2.3e-24) 27 7.2
SB_544| Best HMM Match : PDZ (HMM E-Value=0.15) 27 7.2
SB_39510| Best HMM Match : VWA (HMM E-Value=0) 26 9.5
SB_6077| Best HMM Match : EGF (HMM E-Value=0) 26 9.5
SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0) 26 9.5
>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
Length = 915
Score = 34.3 bits (75), Expect = 0.036
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Frame = +2
Query: 5 IMKFLLFFAMCILVYGNSEDD--FCEIDSIEQEDPCRREGGLCTVAQDCPSDIRAKTGLC 178
I+K +L MC G D+ C+ + ++ C+ EG + C + KTG C
Sbjct: 381 ILKEILKTRMC---KGERSDETRLCKGEGTDETRMCKDEG--TDETRMCKGEGSDKTGKC 435
Query: 179 PKQQKDGIECCYGVSVKETR-CRKHGGE----CFSKGYCSQSLIYEEASD 313
+ +D C G ETR C+ G + C S+G + +E SD
Sbjct: 436 EDEGRDETRMCKGKGRDETRMCKGEGTDETRMCKSEGTDETRMCKDEGSD 485
>SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1120
Score = 34.3 bits (75), Expect = 0.036
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 13/111 (11%)
Frame = +2
Query: 32 MCILVYGNSEDDFCEIDSIEQEDP---CRREGGLCTVAQDCPSD----------IRAKTG 172
+C Y ++ FC S+ D C+ +G C A C + ++ KTG
Sbjct: 510 ICKCAYAPAKPGFCGSGSLSCSDAQTKCQYDGD-CAGADKCCNTQCGKICTSAVLKEKTG 568
Query: 173 LCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEEASDCPEG 325
CPK++ D + C + C +C S G C ++ CPEG
Sbjct: 569 FCPKRRVDHVGVCVNYCGTDGDC-AGDKKCCSNG-CGRTCTSPVRQACPEG 617
>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
Length = 878
Score = 33.5 bits (73), Expect = 0.063
Identities = 26/92 (28%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Frame = +2
Query: 104 CRREGGLCTVAQDCPSDIRAKTGLCPKQQK----DGIECC---YGVSVKETRCRKHGG-- 256
C + C C + G CP DG+ CC Y RC K
Sbjct: 197 CPDKASKCPDGNTCCKLSSDQYGCCPLPNAMCCDDGVHCCPNGYTCDTSSGRCSKGDSVL 256
Query: 257 ECFSKGYCSQS---LIYEEASDCPEGNDCCIL 343
F K Q + + AS+CP+GN CC L
Sbjct: 257 PLFKKTPAKQLKNVVCPDGASECPDGNTCCKL 288
Score = 31.1 bits (67), Expect = 0.33
Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Frame = +2
Query: 104 CRREGGLCTVAQDCPSDIRAKTGLCPKQQK----DGIECC---YGVSVKETRCRKHGG-- 256
C E C C + G CP DG+ CC Y RC K
Sbjct: 422 CPDETSQCPDGNTCCKLSSGQYGCCPLPNAVCCDDGVHCCPNGYTCDTSSGRCNKGDSVL 481
Query: 257 ECFSKGYCSQ--SLIYEEA-SDCPEGNDCCIL 343
F K Q +++ ++CP+GN CC L
Sbjct: 482 PLFKKTPAKQLKNVVCPGGEAECPDGNTCCKL 513
Score = 28.7 bits (61), Expect = 1.8
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 12/85 (14%)
Frame = +2
Query: 125 CTVAQDCPSDIRAKTGLCPKQQK----DGIECC---YGVSVKETRCRKHGG--ECFSKGY 277
C C + G CP DG+ CC Y + C + F K
Sbjct: 354 CPDGNTCCKLSSGQYGCCPLPNAVCCDDGVHCCPNGYTCNSSSGTCSEGDSVLPLFKKTP 413
Query: 278 CSQS---LIYEEASDCPEGNDCCIL 343
Q + +E S CP+GN CC L
Sbjct: 414 AKQLKNVVCPDETSQCPDGNTCCKL 438
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 266 SKGYCSQSLIYEEASDCPEGNDCCIL 343
+K ++ ++AS CP+GN CC L
Sbjct: 188 NKNILGTTVCPDKASKCPDGNTCCKL 213
Score = 27.9 bits (59), Expect = 3.1
Identities = 23/85 (27%), Positives = 28/85 (32%), Gaps = 12/85 (14%)
Frame = +2
Query: 125 CTVAQDCPSDIRAKTGLCPKQQK----DGIECC---YGVSVKETRCRKHGG--ECFSKGY 277
C C + G CP DG+ CC Y C K F K
Sbjct: 279 CPDGNTCCKLSSGQYGCCPLPNAVCCDDGVHCCPNGYTCDTASGTCNKGDSVLPLFKKTP 338
Query: 278 CSQS---LIYEEASDCPEGNDCCIL 343
Q + + S CP+GN CC L
Sbjct: 339 AKQLKNVVCPDGTSQCPDGNTCCKL 363
>SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)
Length = 1907
Score = 31.5 bits (68), Expect = 0.25
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +2
Query: 218 VSVKETRCRKHGGECFSKGYCS--QSLIYEEASDCPEGNDC 334
V+V E HG ECFS GYC+ Q L E G C
Sbjct: 523 VTVSENELLWHGSECFSIGYCAYKQDLFMEATCLMSVGCQC 563
>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 30.3 bits (65), Expect = 0.58
Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Frame = +2
Query: 119 GLCTVAQDCPSDIRAKTGLCPKQQK-DGIECCYGVSVKETRCRKHGGECFSKGYCSQSLI 295
G C+ +C D R C G EC +K C G ECF G+C +
Sbjct: 117 GNCSFHGECVID-RGGNATCRCYTGFSGSECQLASCIKVKNCSNRG-ECFESGFCKCDVG 174
Query: 296 YEEASDCPEGNDC 334
Y DC N C
Sbjct: 175 Y-TGPDC-SNNSC 185
>SB_43368| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-37)
Length = 367
Score = 29.9 bits (64), Expect = 0.77
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 106 PQGRWF-VYCGSGLSI*YQSQNWTLS*AAKRRNRMLLR 216
P GRWF +Y G I + + W+++ A RNR ++R
Sbjct: 99 PFGRWFCLYLGPATEIFFGASIWSITIIAIERNRNIVR 136
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = -3
Query: 344 LKYNNHSLRDSLKLLHISKIDCSSLSRNILRRASDIWSLLRTLRNSIR 201
L+ +N+ +++ +L+H +++ SSL N+ R +S + L L N+ R
Sbjct: 347 LERSNYRIKELEELVHQHEVENSSLRNNLTRTSSQVTKLKCELDNAQR 394
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 29.1 bits (62), Expect = 1.4
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = +2
Query: 119 GLCTVAQDCPSDIR--AKTG-LCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQS 289
G C+ D + I TG CP + C G S ++ + H +C S +C ++
Sbjct: 1949 GNCSALYDIHTGIGDVCPTGHYCPIGSARPLGCPAG-SYQDNKGMSHCKDCPSGYFCHEN 2007
Query: 290 LIYEEASDCPEGNDC 334
SDCP G+ C
Sbjct: 2008 STTYVTSDCPPGSYC 2022
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/51 (21%), Positives = 21/51 (41%)
Frame = +2
Query: 182 KQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEEASDCPEGNDC 334
+ + D +C G + + G+C YC + + CP+G+ C
Sbjct: 2179 RNETDCRDCTQGWFCDDLGLEEPKGQCMQGYYCDGRATHSQQHPCPKGHIC 2229
>SB_52413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 29.1 bits (62), Expect = 1.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 113 PCGTDPLVRWNLFHRNHLHCFRKL 42
P DPL++W LF N L C++ +
Sbjct: 458 PSKFDPLLKWELFRYNELDCWQTI 481
>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
Length = 1552
Score = 28.7 bits (61), Expect = 1.8
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = +2
Query: 113 EGGLCTVAQDCPSDIRAKTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSK----GYC 280
EG C +++DC S G C + G +C + C ++ EC ++ G
Sbjct: 429 EGKTCQLSKDCHSQPCQNAGTCINTE-TGFQCRCAHGWEGPTCDQNTNECAARPCINGRK 487
Query: 281 SQSLIYEEASDCPEG 325
LI + A +C EG
Sbjct: 488 CIDLIGDYACECLEG 502
>SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)
Length = 759
Score = 28.7 bits (61), Expect = 1.8
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Frame = +2
Query: 104 CRREGGLCTVAQDCPSDIRAKTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYC- 280
CR GG C C R+ G C + + G SV RCR G C + C
Sbjct: 605 CRSGGGTCVTRIRC----RSGGGTCVTRIR--CRSGEGTSVTSLRCRSGEGTCVTSIRCR 658
Query: 281 SQSLIYEEASDCPEGNDCCI 340
S + C G + C+
Sbjct: 659 SGEETCVTSISCRSGEETCV 678
>SB_58982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 28.7 bits (61), Expect = 1.8
Identities = 21/87 (24%), Positives = 29/87 (33%)
Frame = +2
Query: 56 SEDDFCEIDSIEQEDPCRREGGLCTVAQDCPSDIRAKTGLCPKQQKDGIECCYGVSVKET 235
S D +C S + CR+ C +D D CPK K +C +
Sbjct: 377 SHDQYCVYASYFMKRNCRKTCKYCEGCEDALED-------CPKYMKSQEQCNLFSGMARK 429
Query: 236 RCRKHGGECFSKGYCSQSLIYEEASDC 316
C + G C S S+ S C
Sbjct: 430 YCARTCGFCCSDRIPDCSIFIRNPSQC 456
>SB_6378| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
Length = 269
Score = 28.3 bits (60), Expect = 2.4
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Frame = +2
Query: 125 CTVAQDCPSDIRAKTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEE 304
C A DCP ++ +C K G +C C GG F + C ++ +
Sbjct: 134 CKAASDCPFGLQCCRSVC----KVGRDCVGSPCSSRADC---GGP-FEQSCCGHRCVFGK 185
Query: 305 A---------SDCPEGNDCC 337
+ SDC EG CC
Sbjct: 186 SCYGRSCDLTSDCSEGESCC 205
>SB_3214| Best HMM Match : Keratin_B2 (HMM E-Value=0.096)
Length = 191
Score = 28.3 bits (60), Expect = 2.4
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Frame = +2
Query: 125 CTVAQDCPSDIRAKTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEE 304
C A DCP ++ +C K G +C C GG F + C ++ +
Sbjct: 56 CKAASDCPFGLQCCRSVC----KVGRDCVGSPCSSRADC---GGP-FEQSCCGHRCVFGK 107
Query: 305 A---------SDCPEGNDCC 337
+ SDC EG CC
Sbjct: 108 SCYGRSCDLTSDCSEGESCC 127
>SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2429
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -1
Query: 280 AVAFRETFSAVLPTSGLFYGHSVTAFDSVFLLLRTESSF--GSDIRWTILSHST 125
+V F F A + L +G + TA+ +V + RT+ S G D W L S+
Sbjct: 2127 SVVFLVAFIAFAQVAFLAFGPTTTAYSTVVRVFRTQFSMFVGGDPDWEALKSSS 2180
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 236 RCRKHGGECFSKGYCSQSLIYEEASDCPEGND 331
+C KH C S S S + + +DC +G+D
Sbjct: 3167 QCAKHQYRCASGRCISASWVCDHVNDCGDGSD 3198
>SB_12157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 27.1 bits (57), Expect = 5.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 179 PKQQKDGIECCYGVSVKETRC 241
P Q +CC+GVS++ RC
Sbjct: 331 PLVQSGSTDCCFGVSLRINRC 351
>SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)
Length = 870
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 345 TKIQQSFPSGQSEASSYIKD*LQ*PFEKHSPP 250
+KI +F S S+ +S++++ LQ E H PP
Sbjct: 715 SKIYDTFISYSSQDASWVRETLQRTLESHVPP 746
>SB_41673| Best HMM Match : Glyco_hydro_38 (HMM E-Value=2.3e-24)
Length = 687
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +3
Query: 159 EPKLDSVLSSKKTESNAVTECP*KRPDVGSTAENVSRKATAVNL*YMKKLQTVPKGMIVV 338
+PK+ ++ VT CP + P V T +NV+ +A + Y KK + ++++
Sbjct: 102 DPKICCQFDFRRLPGGRVT-CPWRIPPVPITEQNVAERAAMLLDQYKKKAKLYKTNVVLI 160
>SB_544| Best HMM Match : PDZ (HMM E-Value=0.15)
Length = 742
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -2
Query: 120 PPSLRHGSSCSMESISQKSSS 58
P + RH S C +E++S+KSSS
Sbjct: 443 PKTERHLSGCPIETLSRKSSS 463
>SB_39510| Best HMM Match : VWA (HMM E-Value=0)
Length = 705
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 125 CTVAQDCPSDIRAKTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKG 274
C Q+C + + T +C K G C G+ KHGG C +KG
Sbjct: 48 CNKNQNCINSFGSFTCVC-KDGFKGDNCETGIDECLNLPCKHGGTCNNKG 96
>SB_6077| Best HMM Match : EGF (HMM E-Value=0)
Length = 1165
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 173 LCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEEASDCPE---GNDC 334
+CP +++ C SV +T ++GG CFS + S Y +CP+ G+DC
Sbjct: 505 VCPDNRQERT-CAGNSSVCDTYLCRNGGSCFS----NNSTYY--TCECPKGYTGHDC 554
>SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +2
Query: 125 CTVAQDCPSDIRAKTGLCPKQQKDGIECCYGVSVKETRCRKH 250
C AQ C + + T C Q + +CC T+C KH
Sbjct: 267 CNTAQ-C-NTTQCNTAQCNTTQCNTTQCCNTTQCNTTQCNKH 306
>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 707
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 87 SNKRIRAAGKVVCVLWLRI 143
+N++IR G V+ LWLR+
Sbjct: 94 ANRQIRRKGSVITALWLRL 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,221,844
Number of Sequences: 59808
Number of extensions: 257578
Number of successful extensions: 814
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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