Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313C12f
(391 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr... 32 0.12
AC006633-3|AAK68375.1| 227|Caenorhabditis elegans Hypothetical ... 31 0.22
Z81595-8|CAB54305.1| 345|Caenorhabditis elegans Hypothetical pr... 29 0.88
Z81595-7|CAB54304.1| 358|Caenorhabditis elegans Hypothetical pr... 29 0.88
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 0.88
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 0.88
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 29 0.88
U41546-5|AAC48222.2| 1022|Caenorhabditis elegans Sodium:neurotra... 29 1.2
AC024839-1|AAF60832.2| 232|Caenorhabditis elegans Thaumatin fam... 29 1.2
Z77659-4|CAB01163.1| 507|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z68159-2|CAD89732.1| 354|Caenorhabditis elegans Hypothetical pr... 28 2.7
AF025472-3|AAB71075.2| 843|Caenorhabditis elegans Hypothetical ... 28 2.7
Z30423-10|CAA83014.1| 216|Caenorhabditis elegans Hypothetical p... 27 3.6
U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical pr... 27 3.6
U41991-7|AAA83347.1| 255|Caenorhabditis elegans Hypothetical pr... 27 3.6
Z68159-3|CAD89733.1| 351|Caenorhabditis elegans Hypothetical pr... 27 4.7
AF039043-7|AAY86190.1| 103|Caenorhabditis elegans Hypothetical ... 27 4.7
AF025472-1|AAY43980.1| 832|Caenorhabditis elegans Hypothetical ... 27 4.7
Z81547-3|CAB04461.1| 253|Caenorhabditis elegans Hypothetical pr... 27 6.2
AL110482-6|CAB60339.1| 179|Caenorhabditis elegans Hypothetical ... 27 6.2
>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
ZC84.1 protein.
Length = 1556
Score = 32.3 bits (70), Expect = 0.12
Identities = 24/82 (29%), Positives = 33/82 (40%)
Frame = +2
Query: 71 CEIDSIEQEDPCRREGGLCTVAQDCPSDIRAKTGLCPKQQKDGIECCYGVSVKETRCRKH 250
CE E P + GG C C S+ GLC + K G E C V +C+++
Sbjct: 1196 CEDAKCECRPPLKAVGGFCQEEIQCSSNQVLHNGLCHNKAKLG-EACLTV----RQCQEN 1250
Query: 251 GGECFSKGYCSQSLIYEEASDC 316
G C + I E+A C
Sbjct: 1251 SGCIEGSCECKKGFI-EKAGKC 1271
>AC006633-3|AAK68375.1| 227|Caenorhabditis elegans Hypothetical
protein F35B3.4 protein.
Length = 227
Score = 31.5 bits (68), Expect = 0.22
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 143 CPSDIRAKTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQ 286
CP A C Q +D +CCY SV T G +CF+ +C Q
Sbjct: 113 CPMQAAADIQYCAAQGQDHTDCCYRNSVGTTLA---GNKCFT--FCDQ 155
>Z81595-8|CAB54305.1| 345|Caenorhabditis elegans Hypothetical
protein T22H2.6b protein.
Length = 345
Score = 29.5 bits (63), Expect = 0.88
Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 8/121 (6%)
Frame = +2
Query: 5 IMKFLLFFAMCILVYGNSEDDFCEIDSIEQEDPCR---REGGLCTVAQDCPSDIRAKTGL 175
IM+ +L F L + E + + E C+ G C + D R+
Sbjct: 78 IMRLILLFLAVFLCRVTAHQCDAETECSDDETCCKLGDNTWGCCPMPNAVCCDDRSHC-- 135
Query: 176 CPKQ---QKDGIECCYGVSVKET--RCRKHGGECFSKGYCSQSLIYEEASDCPEGNDCCI 340
CP G C G K + +K + + ++ + ++AS CP+G+ CC+
Sbjct: 136 CPTGTTCDPQGARCI-GADEKHVPMKKKKPARKTVERNQFNEVVCPDKASKCPDGSTCCL 194
Query: 341 L 343
L
Sbjct: 195 L 195
>Z81595-7|CAB54304.1| 358|Caenorhabditis elegans Hypothetical
protein T22H2.6a protein.
Length = 358
Score = 29.5 bits (63), Expect = 0.88
Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 8/121 (6%)
Frame = +2
Query: 5 IMKFLLFFAMCILVYGNSEDDFCEIDSIEQEDPCR---REGGLCTVAQDCPSDIRAKTGL 175
IM+ +L F L + E + + E C+ G C + D R+
Sbjct: 78 IMRLILLFLAVFLCRVTAHQCDAETECSDDETCCKLGDNTWGCCPMPNAVCCDDRSHC-- 135
Query: 176 CPKQ---QKDGIECCYGVSVKET--RCRKHGGECFSKGYCSQSLIYEEASDCPEGNDCCI 340
CP G C G K + +K + + ++ + ++AS CP+G+ CC+
Sbjct: 136 CPTGTTCDPQGARCI-GADEKHVPMKKKKPARKTVERNQFNEVVCPDKASKCPDGSTCCL 194
Query: 341 L 343
L
Sbjct: 195 L 195
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 29.5 bits (63), Expect = 0.88
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 140 DCPSDIRAKTGLCPKQ--QKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEEASD 313
+CP ++A G CPK KDG CY + C + G+C S+G + Y A
Sbjct: 12963 ECPCKVKAHGGRCPKGYIAKDG--QCYDID----ECETNNGQC-SEGCVNTPGSYYCA-- 13013
Query: 314 CPEG 325
CP G
Sbjct: 13014 CPHG 13017
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 29.5 bits (63), Expect = 0.88
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 140 DCPSDIRAKTGLCPKQ--QKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEEASD 313
+CP ++A G CPK KDG CY + C + G+C S+G + Y A
Sbjct: 12963 ECPCKVKAHGGRCPKGYIAKDG--QCYDID----ECETNNGQC-SEGCVNTPGSYYCA-- 13013
Query: 314 CPEG 325
CP G
Sbjct: 13014 CPHG 13017
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 29.5 bits (63), Expect = 0.88
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Frame = +2
Query: 71 CEIDSIEQEDPCRREGG---LCTVAQDCPSDIRAKTGLCPKQQKDGIECCYGVSVKETRC 241
C ++ P R G LC++ +DCP G C K +G+ C TR
Sbjct: 380 CLLNPCRHGPPSRLGNGITALCSIDKDCPE------GTCSKIGYNGLGFCCSGPASSTRD 433
Query: 242 RKHGGECFSKGYCSQSLIYEEAS-----DCPEGNDCC 337
+ + K C LIY + S +C E CC
Sbjct: 434 GRCPSQAADKLKC---LIYPDNSCHSDHECSEDEKCC 467
>U41546-5|AAC48222.2| 1022|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 12
protein.
Length = 1022
Score = 29.1 bits (62), Expect = 1.2
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = -1
Query: 277 VAFRETFSAVLPTSGLFYGHSVTAFDSVFLLLRTESSFGSDIRWTILSHSTQTTF--PAA 104
V RE + + LFY V D LL SS G + +W + T ++ P +
Sbjct: 43 VKLRELVGSSANDAALFYLECVCHADETERLLNRGSSVGKEKKWKKVKRKTSSSVAPPLS 102
Query: 103 R-ILLFDGIYFTEIIFTVSVN 44
R I G+ ++I T+ V+
Sbjct: 103 RTISSLPGVSSPDVIQTIDVS 123
>AC024839-1|AAF60832.2| 232|Caenorhabditis elegans Thaumatin family
protein 5 protein.
Length = 232
Score = 29.1 bits (62), Expect = 1.2
Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Frame = +2
Query: 77 IDSIEQEDPCRREGGLCTVAQD-CPSDIRAKTGLCPKQQKDGI-------ECCYGVSVKE 232
ID E CRR GG D CP D+ + K G ECC G
Sbjct: 130 IDPYGGEGDCRRAGGCFKNINDFCPGDLAVRKDGRTVGCKSGCVAYNNDQECCRGAFGTP 189
Query: 233 TRCRKHGGECFSKGYC--SQSLIYEEAS 310
+CR+ K C + S Y++A+
Sbjct: 190 DKCRQSRTAMLFKDACPTAYSYAYDDAT 217
>Z77659-4|CAB01163.1| 507|Caenorhabditis elegans Hypothetical
protein F23B12.5 protein.
Length = 507
Score = 28.3 bits (60), Expect = 2.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 185 QQKDGIECCYGVSVKETRCRKH--GGECFSKGYCSQSLIYEEASDCPEGNDCCILV 346
Q+K+G + G + E K G E +GY ++ LI E + D P G CI+V
Sbjct: 98 QKKEGDQLSEGDLLCEIETDKATMGFETPEEGYLAKILIQEGSKDVPIGKLLCIIV 153
>Z68159-2|CAD89732.1| 354|Caenorhabditis elegans Hypothetical
protein C33D9.3a protein.
Length = 354
Score = 27.9 bits (59), Expect = 2.7
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = -2
Query: 174 SPVLALISDGQS*ATVHKPPSLRHGSSCSMESISQKSSSLFP*TRMHIAKNNKNFMMT 1
SP ++ SD S V P SS S +S S KSS L TR+ ++ N+N T
Sbjct: 55 SPTVSPPSDTSSPPNVIGCPETTSFSSTSRKSKSSKSSPLASPTRLVASELNRNVSKT 112
>AF025472-3|AAB71075.2| 843|Caenorhabditis elegans Hypothetical
protein ZK250.6 protein.
Length = 843
Score = 27.9 bits (59), Expect = 2.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 143 NPEPQYTNHLPCGTDPLVRW 84
N + YTN+ CG D ++RW
Sbjct: 483 NTKHTYTNNTDCGWDKIIRW 502
>Z30423-10|CAA83014.1| 216|Caenorhabditis elegans Hypothetical
protein T20G5.12 protein.
Length = 216
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +2
Query: 134 AQDCPSDIRAKTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQS 289
+ +CP + + C Q KD +CC V T G +C + +C Q+
Sbjct: 120 SSECPIEFLPEMQFCAAQGKDHSQCCSQSQVDATTA---GSKCLT--FCDQT 166
>U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical
protein F46F11.7 protein.
Length = 320
Score = 27.5 bits (58), Expect = 3.6
Identities = 11/45 (24%), Positives = 19/45 (42%)
Frame = +2
Query: 113 EGGLCTVAQDCPSDIRAKTGLCPKQQKDGIECCYGVSVKETRCRK 247
EG ++ DC + G C + G+ C G ++ +C K
Sbjct: 86 EGSARSIVSDCGKHGKCVNGQCILNRCQGVSCDEGSMCRDGKCEK 130
>U41991-7|AAA83347.1| 255|Caenorhabditis elegans Hypothetical
protein C42D4.3 protein.
Length = 255
Score = 27.5 bits (58), Expect = 3.6
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +2
Query: 143 CPSDIRAKTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQ 286
CP A C Q KD CC +V T G +CF+ +C Q
Sbjct: 120 CPMQAAADIQFCAAQGKDHTACCARNAVGTTLA---GNKCFT--FCDQ 162
>Z68159-3|CAD89733.1| 351|Caenorhabditis elegans Hypothetical
protein C33D9.3b protein.
Length = 351
Score = 27.1 bits (57), Expect = 4.7
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = -2
Query: 174 SPVLALISDGQS*ATVHKPPSLRHGSSCSMESISQKSSSLFP*TRMHIAKNNKN 13
SP ++ SD S V P SS S +S S KSS L TR+ ++ N+N
Sbjct: 55 SPTVSPPSDTSSPPNVIGCPETTSFSSTSRKSKSSKSSPLASPTRLVASELNRN 108
>AF039043-7|AAY86190.1| 103|Caenorhabditis elegans Hypothetical
protein F39C12.4 protein.
Length = 103
Score = 27.1 bits (57), Expect = 4.7
Identities = 21/70 (30%), Positives = 27/70 (38%)
Frame = +2
Query: 71 CEIDSIEQEDPCRREGGLCTVAQDCPSDIRAKTGLCPKQQKDGIECCYGVSVKETRCRKH 250
C IE E C EG CT + S + + +CP+ + C G H
Sbjct: 36 CSSCGIENEGVCISEGRCCTNEECFMSTECSYSAVCPE-----LFCKIG---------HH 81
Query: 251 GGECFSKGYC 280
G C KGYC
Sbjct: 82 PGYCMKKGYC 91
>AF025472-1|AAY43980.1| 832|Caenorhabditis elegans Hypothetical
protein ZK250.5b protein.
Length = 832
Score = 27.1 bits (57), Expect = 4.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 143 NPEPQYTNHLPCGTDPLVRW 84
N E YT+ CG D ++RW
Sbjct: 157 NTEHTYTDETDCGWDKIIRW 176
>Z81547-3|CAB04461.1| 253|Caenorhabditis elegans Hypothetical
protein F53F8.4 protein.
Length = 253
Score = 26.6 bits (56), Expect = 6.2
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +2
Query: 143 CPSDIRAKTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSL 292
CP D + C Q +D +CC V T G +C S +C Q L
Sbjct: 174 CPLDAMKEMQFCAAQGRDHRDCCARNGVTTTLA---GPKCLS--FCDQRL 218
>AL110482-6|CAB60339.1| 179|Caenorhabditis elegans Hypothetical
protein Y39G8B.7 protein.
Length = 179
Score = 26.6 bits (56), Expect = 6.2
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = +2
Query: 176 CPKQQKDGI--ECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEE 304
C K G CCY +E C K G C S G C + +E+
Sbjct: 124 CASWAKRGFCTNCCYSCQDRERYCAKTCGFC-SAGTCKECNSFEK 167
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,146,506
Number of Sequences: 27780
Number of extensions: 199538
Number of successful extensions: 628
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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