BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313C12f (391 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr... 32 0.12 AC006633-3|AAK68375.1| 227|Caenorhabditis elegans Hypothetical ... 31 0.22 Z81595-8|CAB54305.1| 345|Caenorhabditis elegans Hypothetical pr... 29 0.88 Z81595-7|CAB54304.1| 358|Caenorhabditis elegans Hypothetical pr... 29 0.88 U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 0.88 AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 0.88 AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 29 0.88 U41546-5|AAC48222.2| 1022|Caenorhabditis elegans Sodium:neurotra... 29 1.2 AC024839-1|AAF60832.2| 232|Caenorhabditis elegans Thaumatin fam... 29 1.2 Z77659-4|CAB01163.1| 507|Caenorhabditis elegans Hypothetical pr... 28 2.0 Z68159-2|CAD89732.1| 354|Caenorhabditis elegans Hypothetical pr... 28 2.7 AF025472-3|AAB71075.2| 843|Caenorhabditis elegans Hypothetical ... 28 2.7 Z30423-10|CAA83014.1| 216|Caenorhabditis elegans Hypothetical p... 27 3.6 U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical pr... 27 3.6 U41991-7|AAA83347.1| 255|Caenorhabditis elegans Hypothetical pr... 27 3.6 Z68159-3|CAD89733.1| 351|Caenorhabditis elegans Hypothetical pr... 27 4.7 AF039043-7|AAY86190.1| 103|Caenorhabditis elegans Hypothetical ... 27 4.7 AF025472-1|AAY43980.1| 832|Caenorhabditis elegans Hypothetical ... 27 4.7 Z81547-3|CAB04461.1| 253|Caenorhabditis elegans Hypothetical pr... 27 6.2 AL110482-6|CAB60339.1| 179|Caenorhabditis elegans Hypothetical ... 27 6.2 >Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein ZC84.1 protein. Length = 1556 Score = 32.3 bits (70), Expect = 0.12 Identities = 24/82 (29%), Positives = 33/82 (40%) Frame = +2 Query: 71 CEIDSIEQEDPCRREGGLCTVAQDCPSDIRAKTGLCPKQQKDGIECCYGVSVKETRCRKH 250 CE E P + GG C C S+ GLC + K G E C V +C+++ Sbjct: 1196 CEDAKCECRPPLKAVGGFCQEEIQCSSNQVLHNGLCHNKAKLG-EACLTV----RQCQEN 1250 Query: 251 GGECFSKGYCSQSLIYEEASDC 316 G C + I E+A C Sbjct: 1251 SGCIEGSCECKKGFI-EKAGKC 1271 >AC006633-3|AAK68375.1| 227|Caenorhabditis elegans Hypothetical protein F35B3.4 protein. Length = 227 Score = 31.5 bits (68), Expect = 0.22 Identities = 17/48 (35%), Positives = 22/48 (45%) Frame = +2 Query: 143 CPSDIRAKTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQ 286 CP A C Q +D +CCY SV T G +CF+ +C Q Sbjct: 113 CPMQAAADIQYCAAQGQDHTDCCYRNSVGTTLA---GNKCFT--FCDQ 155 >Z81595-8|CAB54305.1| 345|Caenorhabditis elegans Hypothetical protein T22H2.6b protein. Length = 345 Score = 29.5 bits (63), Expect = 0.88 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 8/121 (6%) Frame = +2 Query: 5 IMKFLLFFAMCILVYGNSEDDFCEIDSIEQEDPCR---REGGLCTVAQDCPSDIRAKTGL 175 IM+ +L F L + E + + E C+ G C + D R+ Sbjct: 78 IMRLILLFLAVFLCRVTAHQCDAETECSDDETCCKLGDNTWGCCPMPNAVCCDDRSHC-- 135 Query: 176 CPKQ---QKDGIECCYGVSVKET--RCRKHGGECFSKGYCSQSLIYEEASDCPEGNDCCI 340 CP G C G K + +K + + ++ + ++AS CP+G+ CC+ Sbjct: 136 CPTGTTCDPQGARCI-GADEKHVPMKKKKPARKTVERNQFNEVVCPDKASKCPDGSTCCL 194 Query: 341 L 343 L Sbjct: 195 L 195 >Z81595-7|CAB54304.1| 358|Caenorhabditis elegans Hypothetical protein T22H2.6a protein. Length = 358 Score = 29.5 bits (63), Expect = 0.88 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 8/121 (6%) Frame = +2 Query: 5 IMKFLLFFAMCILVYGNSEDDFCEIDSIEQEDPCR---REGGLCTVAQDCPSDIRAKTGL 175 IM+ +L F L + E + + E C+ G C + D R+ Sbjct: 78 IMRLILLFLAVFLCRVTAHQCDAETECSDDETCCKLGDNTWGCCPMPNAVCCDDRSHC-- 135 Query: 176 CPKQ---QKDGIECCYGVSVKET--RCRKHGGECFSKGYCSQSLIYEEASDCPEGNDCCI 340 CP G C G K + +K + + ++ + ++AS CP+G+ CC+ Sbjct: 136 CPTGTTCDPQGARCI-GADEKHVPMKKKKPARKTVERNQFNEVVCPDKASKCPDGSTCCL 194 Query: 341 L 343 L Sbjct: 195 L 195 >U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein K07E12.1a protein. Length = 13100 Score = 29.5 bits (63), Expect = 0.88 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Frame = +2 Query: 140 DCPSDIRAKTGLCPKQ--QKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEEASD 313 +CP ++A G CPK KDG CY + C + G+C S+G + Y A Sbjct: 12963 ECPCKVKAHGGRCPKGYIAKDG--QCYDID----ECETNNGQC-SEGCVNTPGSYYCA-- 13013 Query: 314 CPEG 325 CP G Sbjct: 13014 CPHG 13017 >AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein. Length = 13100 Score = 29.5 bits (63), Expect = 0.88 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Frame = +2 Query: 140 DCPSDIRAKTGLCPKQ--QKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEEASD 313 +CP ++A G CPK KDG CY + C + G+C S+G + Y A Sbjct: 12963 ECPCKVKAHGGRCPKGYIAKDG--QCYDID----ECETNNGQC-SEGCVNTPGSYYCA-- 13013 Query: 314 CPEG 325 CP G Sbjct: 13014 CPHG 13017 >AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical protein C08G9.2 protein. Length = 2224 Score = 29.5 bits (63), Expect = 0.88 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 8/97 (8%) Frame = +2 Query: 71 CEIDSIEQEDPCRREGG---LCTVAQDCPSDIRAKTGLCPKQQKDGIECCYGVSVKETRC 241 C ++ P R G LC++ +DCP G C K +G+ C TR Sbjct: 380 CLLNPCRHGPPSRLGNGITALCSIDKDCPE------GTCSKIGYNGLGFCCSGPASSTRD 433 Query: 242 RKHGGECFSKGYCSQSLIYEEAS-----DCPEGNDCC 337 + + K C LIY + S +C E CC Sbjct: 434 GRCPSQAADKLKC---LIYPDNSCHSDHECSEDEKCC 467 >U41546-5|AAC48222.2| 1022|Caenorhabditis elegans Sodium:neurotransmitter symporterfamily protein 12 protein. Length = 1022 Score = 29.1 bits (62), Expect = 1.2 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 3/81 (3%) Frame = -1 Query: 277 VAFRETFSAVLPTSGLFYGHSVTAFDSVFLLLRTESSFGSDIRWTILSHSTQTTF--PAA 104 V RE + + LFY V D LL SS G + +W + T ++ P + Sbjct: 43 VKLRELVGSSANDAALFYLECVCHADETERLLNRGSSVGKEKKWKKVKRKTSSSVAPPLS 102 Query: 103 R-ILLFDGIYFTEIIFTVSVN 44 R I G+ ++I T+ V+ Sbjct: 103 RTISSLPGVSSPDVIQTIDVS 123 >AC024839-1|AAF60832.2| 232|Caenorhabditis elegans Thaumatin family protein 5 protein. Length = 232 Score = 29.1 bits (62), Expect = 1.2 Identities = 25/88 (28%), Positives = 33/88 (37%), Gaps = 10/88 (11%) Frame = +2 Query: 77 IDSIEQEDPCRREGGLCTVAQD-CPSDIRAKTGLCPKQQKDGI-------ECCYGVSVKE 232 ID E CRR GG D CP D+ + K G ECC G Sbjct: 130 IDPYGGEGDCRRAGGCFKNINDFCPGDLAVRKDGRTVGCKSGCVAYNNDQECCRGAFGTP 189 Query: 233 TRCRKHGGECFSKGYC--SQSLIYEEAS 310 +CR+ K C + S Y++A+ Sbjct: 190 DKCRQSRTAMLFKDACPTAYSYAYDDAT 217 >Z77659-4|CAB01163.1| 507|Caenorhabditis elegans Hypothetical protein F23B12.5 protein. Length = 507 Score = 28.3 bits (60), Expect = 2.0 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Frame = +2 Query: 185 QQKDGIECCYGVSVKETRCRKH--GGECFSKGYCSQSLIYEEASDCPEGNDCCILV 346 Q+K+G + G + E K G E +GY ++ LI E + D P G CI+V Sbjct: 98 QKKEGDQLSEGDLLCEIETDKATMGFETPEEGYLAKILIQEGSKDVPIGKLLCIIV 153 >Z68159-2|CAD89732.1| 354|Caenorhabditis elegans Hypothetical protein C33D9.3a protein. Length = 354 Score = 27.9 bits (59), Expect = 2.7 Identities = 21/58 (36%), Positives = 28/58 (48%) Frame = -2 Query: 174 SPVLALISDGQS*ATVHKPPSLRHGSSCSMESISQKSSSLFP*TRMHIAKNNKNFMMT 1 SP ++ SD S V P SS S +S S KSS L TR+ ++ N+N T Sbjct: 55 SPTVSPPSDTSSPPNVIGCPETTSFSSTSRKSKSSKSSPLASPTRLVASELNRNVSKT 112 >AF025472-3|AAB71075.2| 843|Caenorhabditis elegans Hypothetical protein ZK250.6 protein. Length = 843 Score = 27.9 bits (59), Expect = 2.7 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = -3 Query: 143 NPEPQYTNHLPCGTDPLVRW 84 N + YTN+ CG D ++RW Sbjct: 483 NTKHTYTNNTDCGWDKIIRW 502 >Z30423-10|CAA83014.1| 216|Caenorhabditis elegans Hypothetical protein T20G5.12 protein. Length = 216 Score = 27.5 bits (58), Expect = 3.6 Identities = 14/52 (26%), Positives = 23/52 (44%) Frame = +2 Query: 134 AQDCPSDIRAKTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQS 289 + +CP + + C Q KD +CC V T G +C + +C Q+ Sbjct: 120 SSECPIEFLPEMQFCAAQGKDHSQCCSQSQVDATTA---GSKCLT--FCDQT 166 >U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical protein F46F11.7 protein. Length = 320 Score = 27.5 bits (58), Expect = 3.6 Identities = 11/45 (24%), Positives = 19/45 (42%) Frame = +2 Query: 113 EGGLCTVAQDCPSDIRAKTGLCPKQQKDGIECCYGVSVKETRCRK 247 EG ++ DC + G C + G+ C G ++ +C K Sbjct: 86 EGSARSIVSDCGKHGKCVNGQCILNRCQGVSCDEGSMCRDGKCEK 130 >U41991-7|AAA83347.1| 255|Caenorhabditis elegans Hypothetical protein C42D4.3 protein. Length = 255 Score = 27.5 bits (58), Expect = 3.6 Identities = 16/48 (33%), Positives = 20/48 (41%) Frame = +2 Query: 143 CPSDIRAKTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQ 286 CP A C Q KD CC +V T G +CF+ +C Q Sbjct: 120 CPMQAAADIQFCAAQGKDHTACCARNAVGTTLA---GNKCFT--FCDQ 162 >Z68159-3|CAD89733.1| 351|Caenorhabditis elegans Hypothetical protein C33D9.3b protein. Length = 351 Score = 27.1 bits (57), Expect = 4.7 Identities = 20/54 (37%), Positives = 27/54 (50%) Frame = -2 Query: 174 SPVLALISDGQS*ATVHKPPSLRHGSSCSMESISQKSSSLFP*TRMHIAKNNKN 13 SP ++ SD S V P SS S +S S KSS L TR+ ++ N+N Sbjct: 55 SPTVSPPSDTSSPPNVIGCPETTSFSSTSRKSKSSKSSPLASPTRLVASELNRN 108 >AF039043-7|AAY86190.1| 103|Caenorhabditis elegans Hypothetical protein F39C12.4 protein. Length = 103 Score = 27.1 bits (57), Expect = 4.7 Identities = 21/70 (30%), Positives = 27/70 (38%) Frame = +2 Query: 71 CEIDSIEQEDPCRREGGLCTVAQDCPSDIRAKTGLCPKQQKDGIECCYGVSVKETRCRKH 250 C IE E C EG CT + S + + +CP+ + C G H Sbjct: 36 CSSCGIENEGVCISEGRCCTNEECFMSTECSYSAVCPE-----LFCKIG---------HH 81 Query: 251 GGECFSKGYC 280 G C KGYC Sbjct: 82 PGYCMKKGYC 91 >AF025472-1|AAY43980.1| 832|Caenorhabditis elegans Hypothetical protein ZK250.5b protein. Length = 832 Score = 27.1 bits (57), Expect = 4.7 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = -3 Query: 143 NPEPQYTNHLPCGTDPLVRW 84 N E YT+ CG D ++RW Sbjct: 157 NTEHTYTDETDCGWDKIIRW 176 >Z81547-3|CAB04461.1| 253|Caenorhabditis elegans Hypothetical protein F53F8.4 protein. Length = 253 Score = 26.6 bits (56), Expect = 6.2 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = +2 Query: 143 CPSDIRAKTGLCPKQQKDGIECCYGVSVKETRCRKHGGECFSKGYCSQSL 292 CP D + C Q +D +CC V T G +C S +C Q L Sbjct: 174 CPLDAMKEMQFCAAQGRDHRDCCARNGVTTTLA---GPKCLS--FCDQRL 218 >AL110482-6|CAB60339.1| 179|Caenorhabditis elegans Hypothetical protein Y39G8B.7 protein. Length = 179 Score = 26.6 bits (56), Expect = 6.2 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%) Frame = +2 Query: 176 CPKQQKDGI--ECCYGVSVKETRCRKHGGECFSKGYCSQSLIYEE 304 C K G CCY +E C K G C S G C + +E+ Sbjct: 124 CASWAKRGFCTNCCYSCQDRERYCAKTCGFC-SAGTCKECNSFEK 167 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,146,506 Number of Sequences: 27780 Number of extensions: 199538 Number of successful extensions: 628 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 596 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 627 length of database: 12,740,198 effective HSP length: 74 effective length of database: 10,684,478 effective search space used: 587646290 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -