Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313C12f
         (391 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p...    31   0.21 
At5g55110.1 68418.m06870 stigma-specific Stig1 family protein si...    29   0.84 
At4g24180.1 68417.m03470 pathogenesis-related thaumatin family p...    29   1.1  
At4g11900.1 68417.m01893 S-locus lectin protein kinase family pr...    27   4.5  
At3g17350.1 68416.m02217 expressed protein                             27   4.5  
At5g05110.1 68418.m00542 cysteine protease inhibitor, putative /...    27   5.9  
At4g11190.1 68417.m01812 disease resistance-responsive family pr...    27   5.9  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    27   5.9  
At5g43790.1 68418.m05355 pentatricopeptide (PPR) repeat-containi...    26   7.8  
At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase cyc...    26   7.8  
At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein...    26   7.8  
At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein ...    26   7.8  
At1g13230.1 68414.m01535 leucine-rich repeat family protein cont...    26   7.8  

>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
           protease, putative contains similarity to cysteine
           proteinase RD21A (thiol protease) GI:435619, SP:P43297
           from [Arabidopsis thaliana]
          Length = 452

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 227 KETRC--RKHGGECFSKGYCSQSLIYEEASDCPEGNDCC 337
           K T C   ++ G+C+S G C     YE A+ C +G+ CC
Sbjct: 372 KSTCCCLYEYNGKCYSWGCCP----YESATCCDDGSSCC 406


>At5g55110.1 68418.m06870 stigma-specific Stig1 family protein
           similar to stigma-specific protein STIG1 [Nicotiana
           tabacum] GI:496647; contains Pfam profile PF04885:
           Stigma-specific protein, Stig1
          Length = 163

 Score = 29.5 bits (63), Expect = 0.84
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 170 GLCPKQQKDGIECCYGVSVKETRCRKHGGEC 262
           GLC  + K G  CC G  V     ++H GEC
Sbjct: 115 GLCKNKCKFGQTCCRGQCVYVAYDKRHCGEC 145


>At4g24180.1 68417.m03470 pathogenesis-related thaumatin family
           protein similar to SP|P28493 Pathogenesis-related
           protein 5 precursor (PR-5) {Arabidopsis thaliana};
           contains Pfam profile PF00314: Thaumatin family
          Length = 255

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
 Frame = +2

Query: 95  EDPCRREGGLCTVAQDCPSDIRAKTGLCPKQQKDGIE----CCYGVSVKETRCRKHGGEC 262
           E  C   G +  + Q CP+++R  +G   K   +       CC G     T C+      
Sbjct: 158 EGTCLTTGCVTDLNQKCPTELRFGSGSACKSACEAFGSPEYCCSGAYASPTECKPSMYSE 217

Query: 263 FSKGYCSQSLIY 298
             K  C +S  Y
Sbjct: 218 IFKSACPRSYSY 229


>At4g11900.1 68417.m01893 S-locus lectin protein kinase family
           protein contains Pfam domains, PF00954: S-locus
           glycoprotein family, PF00069: Protein kinase domain, and
           PF01453: Lectin (probable mannose binding)
          Length = 849

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = -1

Query: 271 FRETFSAVLPTSGLFYGHSVTAFDSVFLLLRTESSFGSDIRWTILSHSTQTTFPAARILL 92
           F ET  +    S +        FDS  L+LR   +  + + W    H + T  P  +I L
Sbjct: 138 FHETVWSTGVNSSMSKDVQAVLFDSGNLVLRDGPNSSAAVLWQSFDHPSDTWLPGGKIRL 197


>At3g17350.1 68416.m02217 expressed protein 
          Length = 278

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 170 GLCPKQQKDGIECCYGVS-VKETRCRKHGGEC 262
           G+ P     GIE  Y V+ +   RCRK GG C
Sbjct: 213 GVGPLDWSYGIELSYSVTEIGCDRCRKSGGTC 244


>At5g05110.1 68418.m00542 cysteine protease inhibitor, putative /
           cystatin, putative similar to cysteine proteinase
           inhibitor [Glycine max] GI:1944342; contains Pfam
           profile PF00031: Cystatin domain
          Length = 232

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 117 PSLRHGSSCSMESISQKSSSLFP 49
           P ++  +  +M+S+ QKS+SLFP
Sbjct: 162 PEVQEAAKHAMKSLQQKSNSLFP 184


>At4g11190.1 68417.m01812 disease resistance-responsive family
           protein / dirigent family protein similar to dirigent
           protein [Forsythia x intermedia] gi|6694693|gb|AAF25357;
           similar to disease resistance response protein 206-d
           [Pisum sativum] gi|508844|gb|AAB18669
          Length = 184

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 307 SFFIYQRLTAVAFRETFSAVLPTSG-LFYGHSVTAFD 200
           S  +YQ  T ++FR+ F+   P    +FY H+V A+D
Sbjct: 14  SVLLYQSTTVLSFRQPFNLAKPCKRFVFYLHNV-AYD 49


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 53   NSEDDFCEIDSIEQEDPCRREGGLCTVAQDCPSDIR-AKTGLCPKQQ 190
            N+E  +C    + Q  P  +EG L     +C  ++R   TG+ PK++
Sbjct: 4292 NNEKSYCRDVLLSQFSPVFKEGKLLAENLNCLLNVRDQSTGMEPKER 4338


>At5g43790.1 68418.m05355 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 460

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -3

Query: 353 IVTLKYNNHSLRDSLKLLHISKIDCSSLSRNILRR 249
           I+T+  ++H+   S KLLH+S   C S + +ILR+
Sbjct: 32  IITIGLSHHTYPLS-KLLHLSSTVCLSYALSILRQ 65


>At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein contains Pfam domain,
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 259

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -1

Query: 217 SVTAFDSVFLLLRTESSFGSDIRWTILSHSTQTTFPAARILL 92
           + +AF S    LRT+SSF S      +S S+ T F A+ +LL
Sbjct: 25  NTSAFTSTSFRLRTKSSFDS------ISFSSSTPFSASSLLL 60


>At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein 1
           (SOL1) identical to CXC domain containing TSO1-like
           protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427;
           contains Pfam profile PF03638: Tesmin/TSO1-like CXC
           domain; supporting cDNA
           gi|7767426|gb|AF205142.1|AF205142
          Length = 609

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 182 KQQKDGIECCYGVSVKETRCRKHGGECFSKG-YC 280
           +Q  +G   C   + K+++C K   ECF+ G YC
Sbjct: 318 EQSGEGDSSCKRCNCKKSKCLKLYCECFAAGFYC 351


>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein
           similar to finger protein pcp1 GB:S48856 from [Solanum
           tuberosum]  contains Pfam domain, PF00096: Zinc finger,
           C2H2 type
          Length = 513

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 224 VKETRCRKHGGECFSKGYCSQSLIYEEASDCPEGNDCC 337
           +K+  CRKHG + +    CS+   Y   SDC   +  C
Sbjct: 163 IKKHFCRKHGEKKWKCDKCSKK--YAVQSDCKAHSKTC 198


>At1g13230.1 68414.m01535 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to gb|U42445
           Cf-2.2 from Lycopersicon pimpinellifolium
          Length = 424

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = -3

Query: 128 YTNHLPCGTDPLVRWNLFHRNHLHCFRKLEC 36
           Y N LPC +   +R  LF   HL       C
Sbjct: 94  YENSLPCSSSLQIRPELFELKHLRSLSFFNC 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,581,811
Number of Sequences: 28952
Number of extensions: 182718
Number of successful extensions: 562
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)