Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313C10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   225   3e-60
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   225   3e-60
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    49   5e-07
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   3.0  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   3.9  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    26   3.9  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   5.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   5.2  
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr...    25   5.2  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    25   6.8  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   9.0  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  225 bits (550), Expect = 3e-60
 Identities = 103/137 (75%), Positives = 120/137 (87%)
 Frame = -2

Query: 520 IRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAI 341
           +  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAI
Sbjct: 7   LNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAI 66

Query: 340 RKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVA 161
           RKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA
Sbjct: 67  RKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVA 126

Query: 160 NVSLLALYKEKKERPRS 110
            V L AL+ EKKE+PR+
Sbjct: 127 GVGLSALFHEKKEKPRA 143


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  225 bits (550), Expect = 3e-60
 Identities = 103/137 (75%), Positives = 120/137 (87%)
 Frame = -2

Query: 520 IRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAI 341
           +  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAI
Sbjct: 7   LNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAI 66

Query: 340 RKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVA 161
           RKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA
Sbjct: 67  RKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVA 126

Query: 160 NVSLLALYKEKKERPRS 110
            V L AL+ EKKE+PR+
Sbjct: 127 GVGLSALFHEKKEKPRA 143


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 48.8 bits (111), Expect = 5e-07
 Identities = 31/82 (37%), Positives = 49/82 (59%)
 Frame = -2

Query: 412 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 233
           G+   +G+      V+ K+PNSA+RK  RV+L   G+ VTA++P  G  ++ +E+  VL+
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103

Query: 232 AGFGRKGHAVGDIPGVRFKVVK 167
            G GR      D PGV++ VV+
Sbjct: 104 RG-GR----AQDCPGVQYHVVR 120


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +3

Query: 231 ATSTSSFSSMWFRQPS---RGTNAVTFFPFLMSCTRTHLRMA 347
           ++S S F S+WFRQ +       AVT+F   MS    HL  A
Sbjct: 154 SSSVSCFFSLWFRQTNIVWMVFIAVTYFASNMSFFNPHLAEA 195


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 171 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSR 281
           +++K  P + P   P  P+ AT+TSS  +++   PSR
Sbjct: 392 SSVKALPTLEP---PSSPSHATATSSLHTLFHTAPSR 425


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +2

Query: 17  HNIYYVLGFYIL*TYKQRASRQQVTYHNVHL*SWSLLFLFVESEERHVGYFYHLKTN--S 190
           HN  Y++  Y   T K++  R  +++HN     W+ L  F+      + YFY   ++  S
Sbjct: 179 HNNPYIIRGYRFYTSKRKCFRSILSWHNETFNIWTHLSAFIVF-FAVLAYFYPSSSSWVS 237

Query: 191 GNVTDGV 211
            NV++ +
Sbjct: 238 SNVSNRI 244


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -2

Query: 475 WADKEFKKAHMGTKWKANPFGGASHAKGIV 386
           W D EF   H   K+   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +1

Query: 469 PPIAVHDGGSRAYAP 513
           PP AV  GGSR YAP
Sbjct: 781 PPPAVSAGGSRYYAP 795


>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 113 SWSLLFLFVESEERHVGYFYHLKTNSGNVTD--GVTFTTESRH 235
           SW L+++ V S+E+  GY   L     N+ D  G+    ES H
Sbjct: 129 SWYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 3   FFLLYTIFIMY*DFTFYELINNALPDSRSLITMYTY 110
           FFL +TI +++    F      ++P +  LIT+  Y
Sbjct: 199 FFLSFTILLVFTSPEFANTFIRSIPSNEGLITLSGY 234


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 283 PRDGCLNHIEENDEVLVAGFGRKGHAVG 200
           PR+  +++ + ND + + G+G +GH  G
Sbjct: 74  PREKLVDYFK-NDTLAIIGYGSQGHGQG 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,251,462
Number of Sequences: 5004
Number of extensions: 46213
Number of successful extensions: 105
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)