Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313C08f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013) 42 4e-04
SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_11461| Best HMM Match : NHL (HMM E-Value=0) 30 1.3
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20) 29 2.3
SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_39636| Best HMM Match : WSC (HMM E-Value=0.34) 29 3.1
SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_25705| Best HMM Match : PH (HMM E-Value=2e-17) 28 5.4
SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_44857| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12) 27 7.1
SB_31695| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_56393| Best HMM Match : CTF_NFI (HMM E-Value=0.75) 27 9.4
SB_35197| Best HMM Match : SAP (HMM E-Value=3.2) 27 9.4
SB_35345| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)
Length = 310
Score = 41.5 bits (93), Expect = 4e-04
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = -2
Query: 520 CPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSE 407
C D A +KKKML S+++ LKK G++KY +A+++ E
Sbjct: 261 CSDEAPIKKKMLAGSTWEYLKKKFDGLKKYFEASEICE 298
>SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 30.7 bits (66), Expect = 0.76
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = -2
Query: 520 CPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 380
C D A +KK+M+ +++ + LK V V+K Q D ++ + + + +K
Sbjct: 99 CSDNAPIKKRMVSAATNELLKTKFV-VKKVFQINDRADLNYDDIADK 144
>SB_11461| Best HMM Match : NHL (HMM E-Value=0)
Length = 819
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = -2
Query: 346 THELA--TKPNPLSDTPALTTRGHDTTSRLVLLQRKTNSINMIDF 218
T EL+ T+ NPL TPAL++RG T R+ + + N+ IDF
Sbjct: 296 TQELSDTTRLNPL--TPALSSRGQRGTPRIPYRESQQNAEGNIDF 338
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 91 CHPYSY--NGCPALQTETHYCFTAEIGRGRWYLPARTHKRSYH 213
CHP N C +T+ + C + + WY P++T YH
Sbjct: 437 CHPTKTQANWCHPTKTQANLCHPTKT-QANWYHPSKTQANWYH 478
>SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)
Length = 151
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = -2
Query: 520 CPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLRAT 368
C D A ++KKM +S+ D ++K + A D + + + K T
Sbjct: 99 CSDKAPIEKKMKLASTQDYVRKKFSEATTSVNANDFDDLDYDEIAAKAEKT 149
>SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1690
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -2
Query: 469 DALKKSLVGVQKYIQATDLSEASQEAVEEKLRATDRQ*TAFTHELATK 326
D LKK + +QK +L +AS E EEK + + + F H++A K
Sbjct: 403 DGLKKRMEQIQK-----ELQQASSELEEEKKKTENLLSSIFPHDVANK 445
>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -2
Query: 346 THELATKPNPLSDTPALTTRGHDTTSRLVLLQRKT-NSINMIDFTGGRTSCESARVGTTA 170
THE L DT T HDTT L T N + D TG T T
Sbjct: 515 THETTRHDTHLHDTTENDTHPHDTTGNDTYLHDTTENDTHPHDTTGNDTQLHDTTGNKTR 574
Query: 169 P 167
P
Sbjct: 575 P 575
>SB_39636| Best HMM Match : WSC (HMM E-Value=0.34)
Length = 390
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 199 CESARVGTTAPCLFLP*SSNAFRFEGRGSRCNYMGGTFML 80
C+S TT+ C++L NA RC +GGTF L
Sbjct: 207 CKSGWHSTTSRCIYL--MPNATYPGSTAERCRLLGGTFFL 244
>SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 692
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/51 (33%), Positives = 19/51 (37%)
Frame = -1
Query: 428 PSDRPLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPDDTRPRH 276
P DRP + P RS S Y RD A + C D R RH
Sbjct: 458 PRDRPRARAHDTDQPSDPCQRSADQSPYPTQRDSQPGAGKRPCSDAGRHRH 508
>SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)
Length = 409
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 400 QEAVEEKLRATDRQ*TAFTHEL--ATKPNPLSDTPALTTRGH 281
+E K+ AT+ AFTH+L KP +SD P + +G+
Sbjct: 22 EETPPIKIEATNHHAKAFTHDLENLAKPLKVSDVPNVFLQGY 63
>SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 733
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/48 (35%), Positives = 19/48 (39%)
Frame = -1
Query: 470 RRSEKVPCRSSEVHPSDRPLGSVSGGRRREAPRHRSPINSIYTRARDE 327
RRS + PCR S +D LG R R SP S T E
Sbjct: 238 RRSSEAPCRQSRRSSNDARLGQFVEKRNFHGNRFVSPKKSKKTEVNRE 285
>SB_44857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +2
Query: 350 CCLLAIGGAELLFDGLLRRFREVGRLDVLLNSDKGLFQS---VERARVQHLLLDLGG 511
CC+L + E L + +GR D + + G F + R +HL+ +GG
Sbjct: 85 CCILRMSMTEALAGATINAAASLGRADTHGSLEVGKFADMVVINAERWEHLIYQIGG 141
>SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +2
Query: 344 CKCCLLAIGGAELLFDGLLRRFREVGRLDVLLNSDKGLFQS 466
C CLL G + L DGL RR G ++VLL D G +S
Sbjct: 348 CIACLLFGGSRKRLPDGLTRR----GDINVLLLGDPGTAKS 384
>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
Length = 872
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 105 LQRLPRPSNRNALLLHGRNRQGA 173
+QR P P+ RN++ LHG Q A
Sbjct: 30 VQRRPEPTPRNSIFLHGLRAQTA 52
>SB_31695| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -2
Query: 478 SSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLRATDRQ*TAFTHELATKPN 320
SSF A + L+ Y + TD E + ++ + ATD T+ H +P+
Sbjct: 244 SSFTAEIRDLIETSSYTKDTDFDEETSSLLKSQTDATDDTMTSDEHCRTQEPS 296
>SB_56393| Best HMM Match : CTF_NFI (HMM E-Value=0.75)
Length = 886
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 410 GSVSGGRRREAPRHRSPINSIYTRARDETE 321
G V +R +P RS S ++RDETE
Sbjct: 62 GQVCNNKREASPNSRSGAGSARKKSRDETE 91
>SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)
Length = 323
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +3
Query: 210 PPVKSIILILFVFLCNNTKRLVVSWPRVVRAGVSESGFGFVASSCVNAVYWRSVARS 380
P + II+I+++ + NNT L SW V A + C WR +AR+
Sbjct: 125 PLIIIIIVIIYIIIINNTGILDRSWAGVQTALKPRANCAMTCQHC-----WRILARN 176
>SB_35345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 410 GSVSGGRRREAPRHRSPINSIYTRARDETE 321
G V +R +P RS S ++RDETE
Sbjct: 67 GQVCNNKREASPNSRSGAGSARKKSRDETE 96
>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 84 INVPPI*LQRLPRPSNRNALLLHGRNRQGAVVPTRADSQEV 206
++VPP L R RP N L + G + + +P + ++++
Sbjct: 299 LSVPPEQLSRNERPKNTTTLFVSGVDTMASKLPVQRSARDI 339
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,006,201
Number of Sequences: 59808
Number of extensions: 353253
Number of successful extensions: 960
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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