Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313C08f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 44 5e-05
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 44 5e-05
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 44 5e-05
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 42 4e-04
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 42 4e-04
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 29 2.0
AC025723-3|AAK29935.1| 254|Caenorhabditis elegans Hypothetical ... 29 2.0
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr... 27 6.2
U80450-11|AAM15595.1| 664|Caenorhabditis elegans Temporarily as... 27 6.2
U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily ass... 27 6.2
U80450-8|AAK77616.1| 949|Caenorhabditis elegans Temporarily ass... 27 6.2
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n... 27 6.2
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 44.4 bits (100), Expect = 5e-05
Identities = 22/55 (40%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Frame = -2
Query: 520 CPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEASQEAVEEKLRATDR 362
CPD A V+++MLY+SS ALK SL G++ +QA+++S+ +++V+ L + R
Sbjct: 98 CPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 151
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 44.4 bits (100), Expect = 5e-05
Identities = 22/55 (40%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Frame = -2
Query: 520 CPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEASQEAVEEKLRATDR 362
CPD A V+++MLY+SS ALK SL G++ +QA+++S+ +++V+ L + R
Sbjct: 98 CPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 151
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 44.4 bits (100), Expect = 5e-05
Identities = 22/55 (40%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Frame = -2
Query: 520 CPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEASQEAVEEKLRATDR 362
CPD A V+++MLY+SS ALK SL G++ +QA+++S+ +++V+ L + R
Sbjct: 158 CPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 211
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -2
Query: 520 CPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEASQE 395
CPD A +KKKM+Y+SS A+K SL G Q +D SE S +
Sbjct: 110 CPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHK 152
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = -2
Query: 520 CPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEASQEAVEEKL 377
CPD A +KKKM+Y+SS A+K SL G Q +D SE S + + KL
Sbjct: 110 CPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = -2
Query: 520 CPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQATDLSEASQEAVEEKL 377
CPD A +KKKM+Y+SS A+K SL G Q +D SE S + + KL
Sbjct: 110 CPDGASIKKKMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
F32H2.5 protein.
Length = 2586
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 404 RFREVGRLDVLLNSDKGLFQSVERARVQHLLLD 502
RF E+G++D+ NS G+ + ++ V +LLD
Sbjct: 1828 RFLEIGKVDLSQNSSLGMAKLLDNVSVHGILLD 1860
>AC025723-3|AAK29935.1| 254|Caenorhabditis elegans Hypothetical
protein Y54F10AM.6 protein.
Length = 254
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 293 RQGRSVGERVRFRRELVCKCC 355
R+GR G+ ++FR E VC+CC
Sbjct: 196 RKGR--GKNIKFRTEKVCRCC 214
>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
protein C01C7.1 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 413 LGSVSGGRRREAPRHRSPINSIYTRARDETEPA 315
L ++S R+ P R P+ ++Y R +D PA
Sbjct: 688 LTALSSSRKDPIPAPRGPVAAVYARGKDIPTPA 720
>U80450-11|AAM15595.1| 664|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform d protein.
Length = 664
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 364 DRWRGASLRRPPETLPRGRSLGCTSELRQGT 456
+RWRG +PP PR S + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465
>U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform a protein.
Length = 1112
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 364 DRWRGASLRRPPETLPRGRSLGCTSELRQGT 456
+RWRG +PP PR S + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465
>U80450-8|AAK77616.1| 949|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform c protein.
Length = 949
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 364 DRWRGASLRRPPETLPRGRSLGCTSELRQGT 456
+RWRG +PP PR S + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465
>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
non-receptor tyrosinekinase protein.
Length = 1043
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 413 LGSVSGGRRREAPRHRSPINSIYTRARDETEPA 315
L ++S R+ P R P+ ++Y R +D PA
Sbjct: 688 LTALSSSRKDPIPAPRGPVAAVYARGKDIPTPA 720
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,231,766
Number of Sequences: 27780
Number of extensions: 253269
Number of successful extensions: 675
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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