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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313C08f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4) id...    50   9e-07
At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4) id...    50   9e-07
At4g00680.1 68417.m00093 actin-depolymerizing factor, putative s...    50   9e-07
At3g45990.1 68416.m04976 actin-depolymerizing factor, putative s...    50   1e-06
At1g01750.1 68414.m00094 actin-depolymerizing factor, putative s...    49   2e-06
At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1) id...    48   4e-06
At3g46000.1 68416.m04977 actin-depolymerizing factor, putative (...    47   9e-06
At5g52360.1 68418.m06497 actin-depolymerizing factor, putative s...    46   1e-05
At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3) id...    46   2e-05
At4g25590.1 68417.m03687 actin-depolymerizing factor, putative s...    46   2e-05
At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6) id...    42   3e-04
At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5) id...    40   8e-04
At4g34970.1 68417.m04957 actin-depolymerizing factor, putative s...    38   0.003
At5g63320.1 68418.m07946 expressed protein                             29   1.4  
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea...    29   2.5  
At3g01560.1 68416.m00086 proline-rich family protein contains pr...    29   2.5  
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ...    28   4.4  
At5g28810.1 68418.m03542 hypothetical protein                          27   5.8  
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)...    27   5.8  
At1g64430.1 68414.m07302 expressed protein                             27   5.8  

>At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4)
           identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
           (ADF-4) (AtADF4) {Arabidopsis thaliana}
          Length = 132

 Score = 50.0 bits (114), Expect = 9e-07
 Identities = 21/48 (43%), Positives = 33/48 (68%)
 Frame = -2

Query: 520 CPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 377
           CPD AKV+ KM+Y+SS D  K+ L G+Q  +QATD +E   + ++ ++
Sbjct: 84  CPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLKSRV 131


>At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4)
           identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
           (ADF-4) (AtADF4) {Arabidopsis thaliana}
          Length = 139

 Score = 50.0 bits (114), Expect = 9e-07
 Identities = 21/48 (43%), Positives = 33/48 (68%)
 Frame = -2

Query: 520 CPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 377
           CPD AKV+ KM+Y+SS D  K+ L G+Q  +QATD +E   + ++ ++
Sbjct: 91  CPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLKSRV 138


>At4g00680.1 68417.m00093 actin-depolymerizing factor, putative
           strong similarity to SP|P30175 Actin-depolymerizing
           factor (ADF) {Lilium longiflorum}; contains Pfam profile
           PF00241: Cofilin/tropomyosin-type actin-binding protein
          Length = 140

 Score = 50.0 bits (114), Expect = 9e-07
 Identities = 22/47 (46%), Positives = 34/47 (72%)
 Frame = -2

Query: 517 PDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 377
           PDT++V+ KMLY+SS D  K+ + G+Q  +QATD SE S + ++ +L
Sbjct: 92  PDTSRVRSKMLYASSKDRFKREMEGIQVELQATDPSEMSLDIIKGRL 138


>At3g45990.1 68416.m04976 actin-depolymerizing factor, putative
           similar to SP|Q9ZSK3 Actin-depolymerizing factor 4
           (ADF-4) (AtADF4) {Arabidopsis thaliana}; contains Pfam
           profile PF00241: Cofilin/tropomyosin-type actin-binding
           protein
          Length = 133

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 21/47 (44%), Positives = 33/47 (70%)
 Frame = -2

Query: 517 PDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 377
           P TAK++KKM+YSS+ D  K+ L G+Q    ATDL++ S +A+  ++
Sbjct: 86  PSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRRI 132


>At1g01750.1 68414.m00094 actin-depolymerizing factor, putative
           strong similarity to SP|P30175 Actin-depolymerizing
           factor (ADF) {Lilium longiflorum}; contains Pfam profile
           PF00241: Cofilin/tropomyosin-type actin-binding protein
          Length = 140

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 22/47 (46%), Positives = 34/47 (72%)
 Frame = -2

Query: 517 PDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 377
           PDT++V+ KMLY+SS D  K+ L G+Q  +QATD SE S + ++ ++
Sbjct: 92  PDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIKGRV 138


>At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1)
           identical to SP|Q39250 Actin-depolymerizing factor 1
           (ADF-1) (AtADF1) {Arabidopsis thaliana}
          Length = 139

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = -2

Query: 520 CPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSE 407
           CPD AKV+ KM+Y+SS D  K+ L G+Q  +QATD +E
Sbjct: 91  CPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTE 128


>At3g46000.1 68416.m04977 actin-depolymerizing factor, putative
           (ADF2) strong similarity to SP|Q9ZSK3
           Actin-depolymerizing factor 4 (ADF-4) (AtADF4)
           {Arabidopsis thaliana}; contains Pfam profile PF00241:
           Cofilin/tropomyosin-type actin-binding protein
          Length = 137

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 21/46 (45%), Positives = 31/46 (67%)
 Frame = -2

Query: 517 PDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 380
           PDTAKV+ KM+Y+SS D  K+ L G+Q  +QATD +E   +  + +
Sbjct: 90  PDTAKVRDKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFKSR 135


>At5g52360.1 68418.m06497 actin-depolymerizing factor, putative
           strong similarity to pollen specific
           actin-depolymerizing factor 2 [Nicotiana tabacum]
           GI:22857914; contains Pfam profile PF00241:
           Cofilin/tropomyosin-type actin-binding protein
          Length = 137

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 20/46 (43%), Positives = 33/46 (71%)
 Frame = -2

Query: 517 PDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 380
           PD+++V+ KM+Y+SS D  K+ L G+Q  +QATD SE S + ++ +
Sbjct: 90  PDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSLDIIKSR 135


>At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3)
           identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
           (ADF 3) (AtADF3) {Arabidopsis thaliana}
          Length = 139

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 20/46 (43%), Positives = 31/46 (67%)
 Frame = -2

Query: 517 PDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 380
           PDTA+V+ KM+Y+SS D  K+ L G+Q  +QATD +E   +  + +
Sbjct: 92  PDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFKSR 137


>At4g25590.1 68417.m03687 actin-depolymerizing factor, putative
           strong similarity to pollen specific
           actin-depolymerizing factor 2 [Nicotiana tabacum]
           GI:22857914; contains Pfam profile PF00241:
           Cofilin/tropomyosin-type actin-binding protein
          Length = 130

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 20/46 (43%), Positives = 33/46 (71%)
 Frame = -2

Query: 517 PDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 380
           PD+++V+ KM+Y+SS D  K+ L G+Q  +QATD SE S + ++ +
Sbjct: 83  PDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSR 128


>At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6)
           identical to SP|Q9ZSK2 Actin-depolymerizing factor 6
           (ADF-6) (AtADF6) {Arabidopsis thaliana}
          Length = 146

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 19/46 (41%), Positives = 29/46 (63%)
 Frame = -2

Query: 517 PDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 380
           P T+ ++ K+LYS+S D L + L G+   IQATD +E   E + E+
Sbjct: 99  PSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLRER 144


>At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5)
           identical to SP|Q9ZNT3 Actin-depolymerizing factor 5
           (ADF-5) (AtADF5) {Arabidopsis thaliana}
          Length = 143

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 15/48 (31%), Positives = 33/48 (68%)
 Frame = -2

Query: 517 PDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLR 374
           P+ +K++ K+LY++S D L++ L G+   +QATD +E   + ++++ +
Sbjct: 96  PEASKIRAKILYATSKDGLRRVLEGIHYELQATDPTEMGFDIIQDRAK 143


>At4g34970.1 68417.m04957 actin-depolymerizing factor, putative
           similar to SP|Q9ZNT3 Actin-depolymerizing factor 5
           (ADF-5) (AtADF5) {Arabidopsis thaliana}; contains Pfam
           profile PF00241: Cofilin/tropomyosin-type actin-binding
           protein
          Length = 130

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 14/48 (29%), Positives = 33/48 (68%)
 Frame = -2

Query: 517 PDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLR 374
           P+ +++++KM+Y++S   L++ L GV   +QATD +E   + ++++ +
Sbjct: 83  PEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFDKIQDRAK 130


>At5g63320.1 68418.m07946 expressed protein
          Length = 569

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -1

Query: 509 RQGQEEDVVL*LVRRSEKVPCRSSEVHPSDRPLGSVSGGRR--REAPRHRSPINSIYTRA 336
           ++ QE +VV    + +E V     EVHP DR  G      R  RE PR      S+  +A
Sbjct: 313 KEEQETEVVDMRKQENEVVDMGVEEVHPLDRSEGRTLSPHRKEREDPRASGNEESVSEKA 372

Query: 335 RD 330
           +D
Sbjct: 373 QD 374


>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
           sapiens]
          Length = 726

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -1

Query: 416 PLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPDDTRP 282
           PL + SG     +    SP N   TRA D T PA+     D+ +P
Sbjct: 307 PLATSSGPSGPNSVPGNSPSNIFLTRAGDRTSPAVDGMDVDEAQP 351


>At3g01560.1 68416.m00086 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 511

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 164 AGGGGTYPRGLTRGPTTSKINHINTIRFP 250
           +GGG + PR  +R P    I+ + T+ FP
Sbjct: 441 SGGGSSSPRSESRAPIDDVIDRVTTMGFP 469


>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
           family protein low similarity to Translation initiation
           factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
           aphidicola} SP|P46243, {Salmonella typhimurium}
           SP|P33321; contains Pfam profiles PF05198: Translation
           initiation factor IF-3 N-terminal domain, PF00707:
           Translation initiation factor IF-3 C-terminal domain
          Length = 520

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = +3

Query: 72  DIYNIN-VPPI*LQRLPRPSNRNALLLHGRNRQGAVVPTRADSQEVLPPVKSIILILFVF 248
           DI  I   P I  + L   S++   L+    R   +     D  + L P K ++ +LF F
Sbjct: 165 DIKEIRFTPKIEAKDLKFKSDQALKLMESGYRVKCLAVPDKDKHKELEPEK-LLELLFRF 223

Query: 249 LCNNTKRLVVSWPRVVRAG 305
            C     LV SWP   R G
Sbjct: 224 TCFIGDALVESWPEADRKG 242


>At5g28810.1 68418.m03542 hypothetical protein
          Length = 560

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 303 GVSES-GFGFVASSCVNAVYWRSVARSFSSTA 395
           G+ E+ GFG    +CV  + WRS  + F+ TA
Sbjct: 185 GIGEACGFGKTTLTCVPLLDWRSSRKRFNFTA 216


>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
           identical to SP|O65607 DNA mismatch repair protein MSH3
           (AtMsh3) {Arabidopsis thaliana}
          Length = 1081

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +3

Query: 213 PVKSIILILFVFLCNNTKRLVVSWPRVVRAGVSESGFGFVASSCVNAVYWRSVARSFS 386
           PV S + + +V + N+TK+ +   P  + AG+ E        + VN   W S  +SFS
Sbjct: 679 PVDSKVPMNWVKV-NSTKKTIRYHPPEIVAGLDELALATEHLAIVNRASWDSFLKSFS 735


>At1g64430.1 68414.m07302 expressed protein
          Length = 559

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 290 CRQGRSVGERVRFRRELVCKCCLLAIGGAE 379
           CR G S  E V F + + C  CL+AI  A+
Sbjct: 180 CRVGISPAEEVPFGKIVRCPSCLIAIAVAQ 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,748,701
Number of Sequences: 28952
Number of extensions: 246115
Number of successful extensions: 709
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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