BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313C07f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 33 0.034 SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 0.73 SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 27 1.7 SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 27 2.2 SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 26 3.9 SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 25 5.2 SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 25 6.8 SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 25 9.0 SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 25 9.0 SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 9.0 >SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 297 Score = 32.7 bits (71), Expect = 0.034 Identities = 19/52 (36%), Positives = 23/52 (44%) Frame = +3 Query: 240 RSPCCNSICCSYSCTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPAS 395 + CC+S S C+ CCS TSCC CC + CCSN S Sbjct: 244 KKSCCSSKKPS-CCSQEKKGCCSTE-KTSCCSQEKKSCCTSEKPSCCSNGKS 293 Score = 28.7 bits (61), Expect = 0.56 Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 3/73 (4%) Frame = +3 Query: 258 SICCSY--SCTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCS-NPASGSLHSPCSCCI 428 S CCS S CCS SCC S CC CCS S SCC Sbjct: 223 SSCCSKKDSSPSEKPSCCSQE-KKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSCCT 281 Query: 429 CCRLPIWSSTSST 467 + S+ ST Sbjct: 282 SEKPSCCSNGKST 294 Score = 28.3 bits (60), Expect = 0.73 Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Frame = +3 Query: 243 SPCCNSICCSYS-----CTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPASGSLH 407 S CC+ S S C+ CCS++ SCC CC CCS Sbjct: 223 SSCCSKKDSSPSEKPSCCSQEKKSCCSSK-KPSCCSQEKKGCCSTEKTSCCSQEKKSCCT 281 Query: 408 S-PCSCC 425 S SCC Sbjct: 282 SEKPSCC 288 >SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 374 Score = 28.3 bits (60), Expect = 0.73 Identities = 21/66 (31%), Positives = 26/66 (39%) Frame = +3 Query: 267 CSYSCTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPASGSLHSPCSCCICCRLPI 446 C TL T S+ C T+ CP G L C L W +G L + S Sbjct: 79 CYCGSTLTATEVSSSLC-TTPCPGYGSLMCGGDLYWSVYLTGNGVLQTTVSSSSVSSTTS 137 Query: 447 WSSTSS 464 SS+SS Sbjct: 138 SSSSSS 143 Score = 25.8 bits (54), Expect = 3.9 Identities = 24/87 (27%), Positives = 36/87 (41%) Frame = +3 Query: 207 SFDSSTGLRSCRSPCCNSICCSYSCTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCSN 386 S S+T S SP +S + S + + S+ +S SS + S+ Sbjct: 131 SVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 190 Query: 387 PASGSLHSPCSCCICCRLPIWSSTSST 467 +S S S S +PI SSTSS+ Sbjct: 191 SSSSSSSSSSSSSSSSSVPITSSTSSS 217 >SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual Length = 1283 Score = 27.1 bits (57), Expect = 1.7 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 7/47 (14%) Frame = -3 Query: 201 CPAG--DINLCSVWRNVLRYSLSVSHVGWSNQRSS-----GYCWNSC 82 C AG D++ C+ W Y + NQ +S YCWN C Sbjct: 1237 CSAGVTDMSECNTWSYQKSYDYITGCNNYDNQGNSQTDASDYCWNVC 1283 >SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ssl1|Schizosaccharomyces pombe|chr 3|||Manual Length = 421 Score = 26.6 bits (56), Expect = 2.2 Identities = 12/27 (44%), Positives = 13/27 (48%) Frame = +3 Query: 366 LCWCCSNPASGSLHSPCSCCICCRLPI 446 LC C S P+ G H P C LPI Sbjct: 297 LCACHSIPSRGGFHCPRCKAKVCTLPI 323 >SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosaccharomyces pombe|chr 2|||Manual Length = 269 Score = 25.8 bits (54), Expect = 3.9 Identities = 15/50 (30%), Positives = 20/50 (40%) Frame = +3 Query: 288 RCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPASGSLHSPCSCCICCR 437 +C C + SC P I C F IL A G+ + C +C R Sbjct: 205 KCVICLDSPENLSCTPCGHIFCNFCIL------SALGTTAATQKCPVCRR 248 >SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1639 Score = 25.4 bits (53), Expect = 5.2 Identities = 12/54 (22%), Positives = 25/54 (46%) Frame = -2 Query: 493 TLVQIHTGNVLEVLDHMGSRQHMQQEQGECREPLAGLEQHQHSMAKQHRMPLLG 332 T + G ++ DH + +Q+ E + + Q+ +M+ + R PL+G Sbjct: 958 TSTNLWLGTCTDIHDHKMLEEKLQESNIEAQRIVRSKMQYLSNMSHEIRTPLIG 1011 >SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces pombe|chr 3|||Manual Length = 296 Score = 25.0 bits (52), Expect = 6.8 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = -3 Query: 279 SYRSSKWSCNRGYGRSEGRCCYQRTQCPAGDINLCSVWRN 160 +YRS +W+ E CC C + +I +C V RN Sbjct: 52 TYRS-RWAYVNDPQIGEINCCLNGWLCESNNILVCDVCRN 90 >SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccharomyces pombe|chr 3|||Manual Length = 688 Score = 24.6 bits (51), Expect = 9.0 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%) Frame = +3 Query: 240 RSPCCNSICCSYSCTLRCTFCC---SNRCGTS 326 RS C S +C +CTFC +N GTS Sbjct: 344 RSHLCMEATPSLACANKCTFCWRHGTNPVGTS 375 >SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizosaccharomyces pombe|chr 2|||Manual Length = 482 Score = 24.6 bits (51), Expect = 9.0 Identities = 6/12 (50%), Positives = 10/12 (83%) Frame = +3 Query: 234 SCRSPCCNSICC 269 +CR+PCC+ + C Sbjct: 292 ACRTPCCDKLFC 303 >SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1063 Score = 24.6 bits (51), Expect = 9.0 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = -2 Query: 439 SRQHMQQEQGECREPLAGLEQHQHSMAKQHRMPLLGQQE 323 S QHMQQ+Q + ++ +Q Q +Q + QQ+ Sbjct: 252 SLQHMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQK 290 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,563,190 Number of Sequences: 5004 Number of extensions: 28932 Number of successful extensions: 125 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 112 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 123 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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