Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313C06f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       35   5e-04
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    28   0.058
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    28   0.058
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   1.2  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    23   1.6  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    23   1.6  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   2.9  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   5.0  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   5.0  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   5.0  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    21   5.0  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   6.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.7  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 34.7 bits (76), Expect = 5e-04
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +1

Query: 25  CGMCSMISETLDKLEIHCELNHNIKVTDTMKCD-VCKEDVSVAIQHIHMKQHKDEYKRKR 201
           C  C  I+E    LE H   +   K     KCD  C   V+ ++ + HMK H + Y+   
Sbjct: 233 CPKCPFITEYKHHLEYHLRNHAGSKPFQCNKCDYTC---VNKSMLNSHMKSHSNVYRYSC 289

Query: 202 RKVGKIECNICKKYIMKTYIKYHMKMHG 285
           R     +C+   KY     +K H++ +G
Sbjct: 290 R-----DCSYATKYCHS--LKIHLRRYG 310


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 27.9 bits (59), Expect = 0.058
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 223 CNIC-KKYIMKTYIKYHMKMHGPETERAERKKYCRLCQKPISLHYFVSHLRRVH 381
           C +C +++   + +  HM+ H       ER   CRLC+K  S    ++   R+H
Sbjct: 52  CPVCDRRFSQSSSVTTHMRTHS-----GERPYRCRLCKKAFSDSSTLTKHLRIH 100


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 0.058
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 223 CNIC-KKYIMKTYIKYHMKMHGPETERAERKKYCRLCQKPISLHYFVSHLRRVH 381
           C +C +++   + +  HM+ H       ER   CRLC+K  S    ++   R+H
Sbjct: 308 CPVCDRRFSQSSSVTTHMRTHS-----GERPYRCRLCKKAFSDSSTLTKHLRIH 356


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 19  YQCGMCSMISETLDKLEIHCELNHNIKVTDTMKCDVCK 132
           Y C  CSM     ++L+ H  ++ N K     +CD C+
Sbjct: 219 YGCEHCSMKFSDSNQLKAHVLIHTNEK---PFECDKCR 253


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 414 LVYFFLIWPSLMYSSQVTDKI 352
           L  FF +W ++  SSQVT ++
Sbjct: 274 LFLFFQLWATVYTSSQVTREV 294



 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -1

Query: 494 LYFDLCTNFSHIGQFSNESLLTLIKFAWSIFSS 396
           ++FDLC     + ++    +LT+   ++  F S
Sbjct: 212 IHFDLCQAADDLNRYFEVQVLTIFGVSFYFFIS 244


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 414 LVYFFLIWPSLMYSSQVTDKI 352
           L  FF +W ++  SSQVT ++
Sbjct: 270 LFLFFQLWATVYTSSQVTREV 290



 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -1

Query: 494 LYFDLCTNFSHIGQFSNESLLTLIKFAWSIFSS 396
           ++FDLC     + ++    +LT+   ++  F S
Sbjct: 208 IHFDLCQAADDLNRYFEVQVLTIFGVSFYFFIS 240


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 114 HSISYLNVMIQFTMYLQLI*GFTNHTTHTALVLFYM 7
           H +S L   +  T  L L+  FT+H     + +FYM
Sbjct: 220 HRLSKLIKQLNATYGLILLLMFTSHFIFIVVSIFYM 255


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 508 QLDVLCTLICAPIFHILDSFQMN 440
           ++ VLC LI +   H+LDS + N
Sbjct: 260 KIPVLCKLIQSIPTHLLDSEKKN 282



 Score = 21.0 bits (42), Expect = 6.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 297 KSRKKKILPFVPKANIVTLFCQSPEK 374
           KSR+K  + F       + FC+ PEK
Sbjct: 559 KSREKLTMKFHDGEVDASYFCKLPEK 584


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -1

Query: 74  CISNLSRVSLIILHIPHWYC 15
           C+   ++ SL++ +   WYC
Sbjct: 276 CVVKEAQKSLVLTYEMRWYC 295


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -1

Query: 209 TFLLFRLYSSL 177
           +FLLF LYSSL
Sbjct: 281 SFLLFTLYSSL 291


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -1

Query: 209 TFLLFRLYSSL 177
           +FLLF LYSSL
Sbjct: 207 SFLLFTLYSSL 217


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 181 DEYKRKRRKVGKIECNICKKY 243
           D    K +  GK+E +ICK +
Sbjct: 509 DAIDSKLQTGGKVETSICKNF 529


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 472  IFHILDSFQMNLC 434
            I HIL S ++NLC
Sbjct: 1353 IAHILASTELNLC 1365


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 472  IFHILDSFQMNLC 434
            I HIL S ++NLC
Sbjct: 1353 IAHILASTELNLC 1365


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 472  IFHILDSFQMNLC 434
            I HIL S ++NLC
Sbjct: 1353 IAHILASTELNLC 1365


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 472  IFHILDSFQMNLC 434
            I HIL S ++NLC
Sbjct: 1353 IAHILASTELNLC 1365


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,280
Number of Sequences: 336
Number of extensions: 2774
Number of successful extensions: 19
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)