Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313C06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    30   0.18 
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     30   0.18 
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    28   0.73 
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   1.3  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   1.7  
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom...    27   1.7  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   3.0  
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    26   3.9  
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc...    26   3.9  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   3.9  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    26   3.9  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   5.2  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    25   6.8  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   6.8  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    25   9.0  

>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +1

Query: 211 GKIEC--NICKKYIMKTYIKYHMKMHGPETERAERKKYCRLCQKPISLHYFVSHLRRVHQ 384
           GK  C  N C K I +   KY+++ H  +T  ++R   C LC+     H+ +    R+H+
Sbjct: 441 GKYVCLYNGCNKRIAR---KYNVESH-IQTHLSDRPYRCDLCKAGFVRHHDLKRHLRIHE 496

Query: 385 RG 390
            G
Sbjct: 497 NG 498


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 503 RCSLYFDLCTNFSHIGQFSNESLLTLIKFAWSIFSSFGPL 384
           + +L  D  +  S +G   N+SL   I + WS+F+SF  +
Sbjct: 105 KVALLIDAFSLISGLGSALNQSLAAAIAYNWSLFNSFSKI 144


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 21/119 (17%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
 Frame = +1

Query: 166 MKQHKDEYKRKRRKVGKIECNICKKYIMKTYIKYHMKM----HGPETERAERKKYCRLCQ 333
           ++  K   K +R++     C++ +    + Y ++ +        P   R    KY     
Sbjct: 315 LEDEKQLEKDRRKEALDDFCSLLRNMNFEPYTRWSVAQAKFDQDPRYTRNSNMKYLSKLD 374

Query: 334 KPISLHYFVSHLRRVHQRGPNEEKIDQANLINVNKDSF----ENCPICEKLVHKSKYKE 498
             ++    V HL R +     ++K ++  +   N+D+F    ++  + +K+  ++K+KE
Sbjct: 375 ALVAFEDHVKHLEREYILDKQKQKKEKHRIERKNRDAFRALLQDLRVQKKITLRTKWKE 433


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = +1

Query: 43  ISETLDKLEIHCELNHNIKVTDTMKCDVCKEDVSVAIQHIHMKQHKDEYKRKRRKVGKIE 222
           I ET DK   HC +NH ++    +K D  K+D S   + +    H ++    + K   +E
Sbjct: 780 IMETFDKQVTHCSVNHLVQQIRKLK-DENKKDQSGTDKLMKKIYHCEQ--SLKEKTNSLE 836

Query: 223 CNICKKYIMKTYI 261
             + +K  +K  +
Sbjct: 837 TLVSEKKELKNLL 849


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 321  AIFFSFGSFSFRTMHFHMIFDIGFHNIFFA 232
            ++FF+ G F  R+++   I  I F+ +FFA
Sbjct: 1372 SLFFALGQFVARSIYDSRIISIQFNPLFFA 1401


>SPAC1296.04 |mug65||spore wall assembly protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 334 KPISLHYFVSHLRRVHQRGPNEEKIDQANLI 426
           KP+SLH FV   R + +R   E + D+  L+
Sbjct: 97  KPVSLHSFVRRRRWIRKRKKKELRRDELPLV 127


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -3

Query: 378 YSSQVTDKIV*RYWLLAQTAIFFSFGSFSFRTMHFHMIFDI 256
           ++S +T+    R + LAQ ++  +    +FR   FH+I+++
Sbjct: 844 FTSNITNNYRPRIYYLAQFSVCENQSIMTFRLQPFHVIYEL 884


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 138 IFLTHITFHSISYLNVMIQFTMYLQLI 58
           IF TH T  + S+ +  + FT ++QLI
Sbjct: 211 IFYTHFTSKNYSFFSEGLWFTRWMQLI 237


>SPBC21B10.13c |||transcription factor, homeobox type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +1

Query: 151 IQHIHMKQHKDE---YKRKRRKVGKIECNICKKYIMKT 255
           I +   K H+DE    K++RR+    E  + ++Y +KT
Sbjct: 18  ISNNEAKNHEDEETHQKKRRRRTTDAEATLLEQYFLKT 55


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 40   MISETLDKLEIHCELNHNIKVTDTMKCD 123
            +IS+ LDK  +  E  H+ K+T  + CD
Sbjct: 2279 LISDQLDKQPVMFEELHSEKITHVVACD 2306


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 307 RKKYCRLCQKPISLHYFVSHLRRVHQRGPNEEKIDQANLINVNKD--SFENC 456
           R  YC  C++ ISL+  + H R  HQ+          +L++V  D   F+NC
Sbjct: 433 RIAYCEDCREFISLNAALDHRRSHHQQNIT------GDLVHVYSDFLDFQNC 478


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +1

Query: 355 FVSHLRRVHQRGPNEEKIDQANLINVNKDSFE--NCPICE--KLVHKSKYKEHLADHGK 519
           FVSHL   H +  N+ +I     +N  +D F+  + P+ +    V K  Y + L D  K
Sbjct: 192 FVSHLDMYHSKLLNKSEILSTKRVNRGQDQFDLSSFPLLKVFSSVFKVAYSKALLDAEK 250


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 211 GKIECNICKKYIMKTYIKYHMKMHGPETERAERKKYCRLCQK 336
           G I C  C       +  Y +K+    T  +E   +CR+C++
Sbjct: 154 GHIHCRKCGYIFCNFHSMYQIKLSIHATYDSENGFWCRVCRE 195


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 312 FSFGSFSFRTMHFHMIFDIGFH 247
           FSF SF F ++HF+  F +  H
Sbjct: 117 FSFFSFLFTSLHFNFFFRLCRH 138


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = -1

Query: 215 FPTFLLFRLYSSLCCFMCMC*IATLTSSLHTSHFIVSVTLML*FNSQCISNLSRVSLII 39
           +PT  L  ++S+L    C+         LHT   +V +  +  F    +S+LS   L I
Sbjct: 257 YPTLDLIYIFSALMSVFCLLLSVASLELLHTVQEVVGMQAIKFFIVLILSSLSNFYLNI 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,076,432
Number of Sequences: 5004
Number of extensions: 42045
Number of successful extensions: 133
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)