Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313C06f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1060 + 24007980-24008662,24010078-24010219,24010293-240115... 35 0.034
08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994... 30 1.3
07_01_0454 + 3443871-3444024,3444268-3444356,3445482-3445557,344... 28 4.0
03_02_0322 + 7448046-7448135,7448402-7448515,7449119-7449437,744... 28 4.0
09_04_0489 - 18031187-18031579,18032033-18034030,18034102-180342... 28 5.2
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 28 5.2
01_06_1521 + 37956131-37957204,37958560-37958962,37959370-379594... 28 5.2
07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960... 27 6.9
05_04_0394 - 20906923-20907146,20907251-20907340,20908380-209087... 27 9.1
01_05_0411 - 21918416-21918762,21919003-21919164,21922220-219223... 27 9.1
>08_02_1060 +
24007980-24008662,24010078-24010219,24010293-24011537,
24012453-24013040
Length = 885
Score = 35.1 bits (77), Expect = 0.034
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Frame = +1
Query: 289 ETERAERKKY-CRLCQKPI-SLHYFVSHLRRVHQRGPNEEKIDQANLIN---VNKDSFEN 453
ET+ + Y C+ C + HL H+ G KI++ + KD
Sbjct: 309 ETDADDINSYECQQCNLTFHGQSAYAHHLITFHKMGSKRRKINKVGKFGEPVIGKDGKFE 368
Query: 454 CPICEK-LVHKSKYKEHLADHGK 519
CP+C K +S+Y H+ H K
Sbjct: 369 CPVCNKTFEEQSRYFGHVGSHAK 391
>08_02_1057 +
23995782-23996446,23998026-23998167,23998242-23999486,
23999521-23999529
Length = 686
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 349 HYFVSHLRRVHQRGPNEEKIDQANLINVNKDSFENCPICEK-LVHKSKYKEHLADHGK 519
H+ ++ +V + K+ + + KD CP+C K +S+Y H+ H K
Sbjct: 329 HHLIT-FHKVSSKRRKSNKVSKFGEPVIGKDGKFECPVCNKTFEEQSRYFGHIGSHAK 385
>07_01_0454 +
3443871-3444024,3444268-3444356,3445482-3445557,
3445875-3445880,3445984-3446131,3446237-3446394,
3446473-3446676,3446803-3447038,3447227-3447439,
3447984-3448082,3448262-3448371,3448581-3448655,
3449407-3449485,3449563-3449709,3449785-3449865,
3449975-3450094,3450580-3450702,3451382-3451459,
3451586-3451674,3451760-3451868,3452117-3452227,
3452557-3452612,3452697-3452874,3452971-3453072,
3453160-3453231,3453350-3453415,3453502-3453567,
3453676-3453759,3454638-3454754,3455753-3455827,
3455912-3455995,3456138-3456179
Length = 1148
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/42 (28%), Positives = 27/42 (64%)
Frame = +1
Query: 106 DTMKCDVCKEDVSVAIQHIHMKQHKDEYKRKRRKVGKIECNI 231
D + C+V ++D++ +H+ ++ KD +++RRK K E ++
Sbjct: 582 DKIICNVDEKDIA---EHLRIRLEKDREEKERRKKEKAEAHL 620
>03_02_0322 +
7448046-7448135,7448402-7448515,7449119-7449437,
7449519-7450453
Length = 485
Score = 28.3 bits (60), Expect = 4.0
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +1
Query: 232 CKKYIMKTYIKYHMKMHGPETERAERKKYCRLCQKPISLHYFVSHLRRVHQRGPNEEKID 411
CKK +M I K E E+AE+KK R +K + H +R H + E I+
Sbjct: 57 CKKSLMLDKIVDLQK----EREKAEKKKEKRSDRKALPHGEISKHSKRTHHKKRKHEDIN 112
Query: 412 QAN 420
A+
Sbjct: 113 NAD 115
>09_04_0489 -
18031187-18031579,18032033-18034030,18034102-18034234,
18035360-18036108
Length = 1090
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +1
Query: 55 LDKLEIHCELNHNIKVTDTMKCDVCKEDVSVAIQHIHMKQHKDEYKRKRRKVGK 216
LDK E E N + KC++ +D S +QH + H + K KRRKV K
Sbjct: 329 LDKNETQVEANGK----ECQKCNLTFQDQSAYVQH-QLSFH--QRKAKRRKVNK 375
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +1
Query: 217 IECNICKKYIMKTYIKYHMKMHG--PETER 300
++C+IC + +K IK H++ H P TER
Sbjct: 214 VQCDICGEKHLKKNIKRHLRAHEEVPSTER 243
>01_06_1521 +
37956131-37957204,37958560-37958962,37959370-37959471,
37959569-37959792
Length = 600
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +1
Query: 250 KTYIKYHMKMHGPETERAERKKYCRLCQKPISLHYFVSHLRRVHQRGPNEEKIDQANLIN 429
K YI +K + A ++ CRL H + LR + G N EK+ +A I+
Sbjct: 448 KAYI-IQVKKNAQALASALLRRKCRLVTGGTDNHLVLWDLRNLGLTGKNFEKVCEACHIS 506
Query: 430 VNK 438
+NK
Sbjct: 507 INK 509
>07_03_1651 -
28395369-28395436,28395524-28395575,28395857-28396092,
28396362-28396419,28396509-28396577,28396686-28396791,
28397104-28397171,28397266-28397385,28398144-28398231,
28399433-28399534,28399699-28399757,28399866-28400003,
28400222-28400473,28400508-28400593,28401061-28401165,
28402351-28402516
Length = 590
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 28 GMCSMISETLDKLEIHCELNHNIKVTDTMKCDVCKEDV 141
G CS++ + DK I C L +++V ++ C +C + V
Sbjct: 170 GDCSLVFDD-DKPTISCNLFDSMRVDISLTCSICLDTV 206
>05_04_0394 -
20906923-20907146,20907251-20907340,20908380-20908785,
20909264-20910247
Length = 567
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +1
Query: 250 KTYIKYHMKMHGPETERAERKKYCRLCQKPISLHYFVSHLRRVHQRGPNEEKIDQANLIN 429
K YI+ +K + A ++ CRL H + LR G N EK+ +A I+
Sbjct: 419 KAYIQ-QVKKNAQALAMALLRRKCRLVTGGTDNHLMLWDLRTFGLTGKNFEKVCEACHIS 477
Query: 430 VNK 438
+NK
Sbjct: 478 LNK 480
>01_05_0411 -
21918416-21918762,21919003-21919164,21922220-21922357,
21922992-21923142
Length = 265
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = +1
Query: 43 ISETLDKLEIHCELNHNIKVTDTMKCDVCKEDVSVAIQHIHMKQHKDEYKRKRR 204
+++ +DK++ E+ N +V + K D KED+S +H+ +H E++ + +
Sbjct: 111 LTKVMDKVK---EVKSNPEVVE--KLDKVKEDISSLAHALHLGKHDKEHESEEK 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,965,589
Number of Sequences: 37544
Number of extensions: 222957
Number of successful extensions: 636
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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