Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313C06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    40   2e-05
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   7.7  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 39.5 bits (88), Expect = 2e-05
 Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 2/131 (1%)
 Frame = +1

Query: 19  YQCGMCSMISETLDKLEIHCELNHNIKVTDTMKCDVCKEDVSVAIQ-HIHMKQHKDEYKR 195
           YQC  CS      + L +H  ++   +     KCDVC+     + + H HM+ H  E   
Sbjct: 120 YQCEYCSKSFSVKENLSVHRRIHTKER---PYKCDVCERAFEHSGKLHRHMRIHTGERPH 176

Query: 196 KRRKVGKIECNICKK-YIMKTYIKYHMKMHGPETERAERKKYCRLCQKPISLHYFVSHLR 372
           K        C +C K +I    +  HM+ H       E+   C+ C K     +  S   
Sbjct: 177 K--------CTVCSKTFIQSGQLVIHMRTH-----TGEKPYVCKACGK----GFTCSKQL 219

Query: 373 RVHQRGPNEEK 405
           +VH R    EK
Sbjct: 220 KVHTRTHTGEK 230



 Score = 29.5 bits (63), Expect = 0.022
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
 Frame = +1

Query: 109 TMKCDVCKEDVSVA-IQHIHMKQHKDEYKRKRRKVGKIECNIC-KKYIMKTYIKYHMKMH 282
           T +C +C++      +   H++ H  E +   R      CNIC K + +   +  H + H
Sbjct: 61  TYQCLLCQKAFDQKNLYQSHLRSHGKEGEDPYR------CNICGKTFAVPARLTRHYRTH 114

Query: 283 GPETERAERKKYCRLCQKPISLHYFVSHLRRVHQR 387
                  E+   C  C K  S+   +S  RR+H +
Sbjct: 115 -----TGEKPYQCEYCSKSFSVKENLSVHRRIHTK 144



 Score = 28.3 bits (60), Expect = 0.051
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 421 LINVNKDSFENCPICEKLV-HKSKYKEHLADHGK 519
           L N+ + +++ C +C+K    K+ Y+ HL  HGK
Sbjct: 54  LTNIEEKTYQ-CLLCQKAFDQKNLYQSHLRSHGK 86



 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/64 (14%), Positives = 29/64 (45%)
 Frame = +1

Query: 1   NYHIEQYQCGMCSMISETLDKLEIHCELNHNIKVTDTMKCDVCKEDVSVAIQHIHMKQHK 180
           +Y  + Y+C +C     +   +E+H + + +  V  + +    + ++ ++   +     K
Sbjct: 254 HYGEKVYKCTLCHETFGSKKTMELHIKTHSDSSVVGSPRDSPIEPEIEISQNSVSTGSDK 313

Query: 181 DEYK 192
           + +K
Sbjct: 314 ENHK 317


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 315 FFSFGSFSFRT 283
           +F FG F+FRT
Sbjct: 223 YFLFGDFNFRT 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,170
Number of Sequences: 438
Number of extensions: 2735
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)