Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313C06f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 32 0.20
At2g23100.1 68415.m02756 DC1 domain-containing protein contains ... 30 0.82
At2g02700.1 68415.m00210 DC1 domain-containing protein contains ... 30 0.82
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 29 1.4
At4g14920.1 68417.m02292 PHD finger transcription factor, putative 29 2.5
At3g48340.1 68416.m05276 cysteine proteinase, putative similar t... 29 2.5
At5g51200.1 68418.m06349 expressed protein 28 3.3
At4g02200.2 68417.m00295 drought-responsive family protein simil... 28 3.3
At4g02200.1 68417.m00294 drought-responsive family protein simil... 28 3.3
At3g60300.1 68416.m06740 RWD domain-containing protein contains ... 28 3.3
At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 28 4.4
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 28 4.4
At1g43860.1 68414.m05053 expressed protein 28 4.4
At3g46810.1 68416.m05081 DC1 domain-containing protein contains ... 27 5.8
At2g33385.1 68415.m04092 actin-related protein 2/3 complex 34kDa... 27 5.8
At1g62310.1 68414.m07031 transcription factor jumonji (jmjC) dom... 27 5.8
At3g27473.1 68416.m03434 DC1 domain-containing protein contains ... 27 7.7
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 27 7.7
At1g60720.1 68414.m06835 hypothetical protein 27 7.7
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 32.3 bits (70), Expect = 0.20
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +1
Query: 307 RKKYCRLCQKPISLHYFVS-HLRRVHQRGPNEEKIDQANLINVNKDSFENCPICEKLVHK 483
R C+ C S +Y ++ H++ HQ EE+ D+A ++ S C C K
Sbjct: 18 RNYLCQYCGISRSKNYLITKHIQSHHQMELEEERDDEACEVDEESSSNHTCQECGAEFKK 77
Query: 484 SKY-KEHLADH 513
+ K+H+ H
Sbjct: 78 PAHLKQHMQSH 88
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +1
Query: 217 IECNICKKYIMKTYIKYHMKMHGPETERAERKKYCRLCQKPIS-LHYFVSHLRRVH 381
I C IC +K IK H++ H ++ E K C S H++ VH
Sbjct: 275 INCEICGSKHLKKNIKRHLRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVH 330
>At2g23100.1 68415.m02756 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 711
Score = 30.3 bits (65), Expect = 0.82
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 268 HMKMHGPETERAERKKYCRLCQKPISLH 351
H+K+ G + R E KK+C+ C PIS++
Sbjct: 407 HLKLQGKGSHRGE-KKFCKACCFPISIY 433
>At2g02700.1 68415.m00210 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 499
Score = 30.3 bits (65), Expect = 0.82
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Frame = +1
Query: 211 GKIECNICKKYIMKTYIKYHMKM-HGPETERAERKKYCRL----CQKPISLHY-FVSHLR 372
G CN+CK Y + T + G E E K L I LH+ H++
Sbjct: 307 GAYSCNVCKDYAVHTRCALRKDIWDGIELEGVPEDKDVELPFYRIADGIILHFSHGCHMK 366
Query: 373 RVHQRGPNEEKIDQANLINVNKDSFENCPICEKLVHK 483
E + QA ++ +N+++F C C+ ++H+
Sbjct: 367 FETNGVYKENEFCQACVLPINEENFYVCVKCDFILHE 403
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +1
Query: 217 IECNICKKYIMKTYIKYHMKMHGPETERAERKKYCRLCQKPIS-LHYFVSHLRRVH 381
I C IC +K IK H++ H ++ E K C S H++ VH
Sbjct: 187 INCEICGSKHLKKNIKRHLRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVH 242
>At4g14920.1 68417.m02292 PHD finger transcription factor, putative
Length = 1055
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 7 HIEQYQCGMCSMISETLDKLEIHCELNHNIKVTDTMKCDVCKEDVSVAIQ 156
H+ ++Q GMC + ++ + ++ K+TD+ CD C E + AI+
Sbjct: 881 HVYRHQ-GMCRRLFSVVESVSSTADV---AKLTDSFYCDPCNEGTNSAIK 926
>At3g48340.1 68416.m05276 cysteine proteinase, putative similar to
cysteine endopeptidase precursor [Ricinus communis]
GI:2944446; contains Pfam profile PF00112: Papain family
cysteine protease
Length = 351
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +1
Query: 151 IQHIHMKQHKDE-YKRKRRKVGKIECNICKKYIMKTYIKYHMKMHGPE 291
+ H+H K+ YK K K + N K + IK+H + GP+
Sbjct: 65 VMHVHNTNKKNRSYKLKLNKFADLTINEFKNAYTGSNIKHHRMLQGPK 112
>At5g51200.1 68418.m06349 expressed protein
Length = 1808
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 7 HIEQYQCGMCSMISETLDKLEIHCE--LNHNIKV 102
HI+Q +C +S T+D+L + E + HN+KV
Sbjct: 1758 HIQQEVTDLCGKLSPTIDRLALLNEGKVGHNLKV 1791
>At4g02200.2 68417.m00295 drought-responsive family protein similar
to drought-induced mRNA, Di19 [Arabidopsis thaliana]
gi|469110|emb|CAA55321
Length = 207
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 34 CSMISETLDKLEI--HCELNHNIKVTDTMKCDVCKEDVSV-AIQHIHMKQHKDEYKR 195
C S+ D +E+ H + H + + + C VC V + + HI QH+D +KR
Sbjct: 45 CPFCSDDYDLVELCHHIDEEHQLDANNGI-CPVCSRRVKMHMVDHI-TTQHRDVFKR 99
>At4g02200.1 68417.m00294 drought-responsive family protein similar
to drought-induced mRNA, Di19 [Arabidopsis thaliana]
gi|469110|emb|CAA55321
Length = 214
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 34 CSMISETLDKLEI--HCELNHNIKVTDTMKCDVCKEDVSV-AIQHIHMKQHKDEYKR 195
C S+ D +E+ H + H + + + C VC V + + HI QH+D +KR
Sbjct: 45 CPFCSDDYDLVELCHHIDEEHQLDANNGI-CPVCSRRVKMHMVDHI-TTQHRDVFKR 99
>At3g60300.1 68416.m06740 RWD domain-containing protein contains
weak similarity to RING finger protein 25 (RING finger
protein AO7) (Swiss-Prot:Q9QZR0) [Mus musculus]
Length = 366
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 442 SFENCPICEKLVHKSKYKEHLAD 510
S NCP+C K+ H S EH+ D
Sbjct: 195 SLGNCPVCRKIFHSSDI-EHVLD 216
>At5g66610.1 68418.m08396 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 529
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 250 KTYIKYHMKMHGPETERAERKKYCRLCQKPISLHYFVSH 366
K+ I+Y +H CR C KPI++H + H
Sbjct: 205 KSAIEYGRSVHALGVNWHPECFCCRYCDKPIAMHEYKEH 243
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 27.9 bits (59), Expect = 4.4
Identities = 22/111 (19%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Frame = +1
Query: 79 ELNHNIKVTD--TMKCDVCKEDVSVAIQHIHMKQHKDEYKRKRRKVGKIECNI--CKKYI 246
E NI + D +K +V + + + + H + K K+ K+ +E + CKK +
Sbjct: 1367 ETYRNIDIADYNRLKDEVRQLEEKLKAKDAHAEDCKKVLLEKQNKISLLEKELTNCKKDL 1426
Query: 247 MKTYIKYHMKMHGPETERAERKKYCRLCQKPISLHYFVSHLRRVHQRGPNE 399
+ + T ++E K + +K +HY ++ +R +++ +E
Sbjct: 1427 SEREKRLDDAQQAQATMQSEFNKQKQELEKNKKIHYTLNMTKRKYEKEKDE 1477
>At1g43860.1 68414.m05053 expressed protein
Length = 370
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +1
Query: 115 KCDVCKEDVSVAIQHI-HMKQ--HKDEYKRKRRKVGKIECNICKKYI 246
KC C V A Q+ H K HK KRK RK+ I + C I
Sbjct: 310 KCSTCNTFVGEAKQYREHCKSDWHKHNLKRKTRKLPPISADECMSEI 356
>At3g46810.1 68416.m05081 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 686
Score = 27.5 bits (58), Expect = 5.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 307 RKKYCRLCQKPISLHYFVS 363
R++ C LC++P+ + YF S
Sbjct: 74 RRQRCHLCERPVGIGYFCS 92
>At2g33385.1 68415.m04092 actin-related protein 2/3 complex 34kDa
subunit family / arp2/3 complex 34kDa subunit family low
similarity to SP|O15144| ARP2/3 complex 34 kDa subunit
(P34-ARC) (Actin-related protein 2/3 complex subunit 2)
{Homo sapiens}; contains Pfam profile PF04045: Arp2/3
complex, 34 kD subunit p34-Arc
Length = 365
Score = 27.5 bits (58), Expect = 5.8
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +1
Query: 49 ETLDKLEIHCELNHNIKVTDTMKCDVCKEDVSVAIQHIHMKQHKDEYKRKRRKVGK--IE 222
ETL KL + L + +C KE V V + MKQ E R R K+ K I+
Sbjct: 275 ETLVKLLNNTSLEEEAAQNENGRCKYVKEFVKVPKGKLMMKQRCKEMTR-RVKISKFRIK 333
Query: 223 CNICKKY 243
N C ++
Sbjct: 334 INGCARF 340
>At1g62310.1 68414.m07031 transcription factor jumonji (jmjC)
domain-containing protein similar to nuclear protein
5qNCA [Homo sapiens] GI:13161188; contains Pfam profile
PF02373: jmjC domain
Length = 883
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 237 KIYYENLYQISYENAWSGN*KSRKKKIL-PFVPKANIVTLFCQSPEKSTSK 386
K+ + N +Q+SY+ +W+ +RKK+ L PF+ K + + S ++ S+
Sbjct: 6 KLEHMNCFQLSYQYSWT----TRKKRTLKPFMSKGSSPSSSSDSRKRKLSR 52
>At3g27473.1 68416.m03434 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 662
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 520 AYRDQLDVLCTLICAPIFH 464
+YRD+ D+LC+ I P H
Sbjct: 463 SYRDKFDLLCSSITVPFIH 481
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 178 KDEYKRKRRKVGKIECNICKKYIMKTYIKYHMKMHG 285
KD +++ K+ + C++YI+K ++K H +G
Sbjct: 683 KDSIANVLKQLRKLPWSECEQYILKCFMKVHKGKYG 718
>At1g60720.1 68414.m06835 hypothetical protein
Length = 289
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 7 HIEQYQCGMCSMISETLDKLEIHCE 81
HI+ + C +C++ +E+ D L CE
Sbjct: 163 HIQSFDCCLCTIETESRDHLLFSCE 187
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,323,496
Number of Sequences: 28952
Number of extensions: 204947
Number of successful extensions: 699
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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