Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313C05f
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0106 - 41107673-41107942,41108362-41108574,41108877-411090...    29   1.6  
08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492           28   3.6  
06_01_0870 + 6623478-6624257                                           28   4.8  
02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123     27   6.3  

>01_07_0106 -
           41107673-41107942,41108362-41108574,41108877-41109041,
           41109431-41109649,41110205-41110324,41110427-41110489,
           41111034-41111606,41111691-41111858,41112414-41112495,
           41112667-41112743,41113031-41113101,41114315-41114363
          Length = 689

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = +3

Query: 162 VQKVPIIKEVPV----IKELPIIREV--PVVXTLXIGHPGPXPIXDTVHVXKTXVLPF 317
           V++   ++EVP     +KE PI+REV  P+  T  I    P P  DT  +    + PF
Sbjct: 245 VRETSFLREVPAPVSPVKETPILREVPTPLKETPVILTESPPPPTDTSSITVESLHPF 302


>08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492
          Length = 1141

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -3

Query: 197 HRNFFYDRHFLNV-RVVMVQSMHFV-RYVDPEMCDFSVTKRLWLWQRVSQAHGDRGSQDE 24
           H+N F++  F++  R +   S H + R +    C     + LW+   +   +G+R S D 
Sbjct: 98  HKNRFFNGEFMSYFRKLGKTSWHKIARELKDSQCHLQNLRNLWVQYEIQLPNGNRVSTDV 157

Query: 23  ND 18
            D
Sbjct: 158 ED 159


>06_01_0870 + 6623478-6624257
          Length = 259

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 53  PG*PFARARA-VWSRKSHTFQDPRTLRSAYSAPSPHARSES 172
           P  P ARA A  W+R  H    P +  +A  AP+P  R+E+
Sbjct: 109 PSSPRARAAARFWARFFHGEVSPLSRAAAVLAPTPEERAEA 149


>02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123
          Length = 422

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +2

Query: 86  WSRKSHTFQDPRTLRS----AYSAPSPHARSESAYHKRS 190
           W++K+  F +P  L S    AY +PSP  + +  Y  RS
Sbjct: 234 WAKKTVMFPNPAFLASTSSAAYDSPSPSKKQKRFYKTRS 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,738,012
Number of Sequences: 37544
Number of extensions: 234228
Number of successful extensions: 546
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)