Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313C05f
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6506| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.075
SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51) 28 4.9
SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09) 27 8.6
>SB_6506| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 33.9 bits (74), Expect = 0.075
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +3
Query: 162 VQKVPIIKEVPVIKELPIIREVPVVXTLXIGHPGPXPIXDTVHVXKTXVLPFLSI 326
VQ + I++ +PVI+ +PI R +P+V + + PI + + + V+P + +
Sbjct: 61 VQVISIVRVIPVIRNIPIFRVIPIVRVIPVTR--VIPIVQVISIVR--VIPIIRV 111
Score = 33.1 bits (72), Expect = 0.13
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +3
Query: 165 QKVPIIKEVPVIKELPIIREVPVVXTLXI 251
Q +PI++ +PVI+ +P+ R +P++ + I
Sbjct: 2 QVIPIVRVIPVIRVIPVTRVIPIIQVIPI 30
Score = 32.3 bits (70), Expect = 0.23
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +3
Query: 162 VQKVPIIKEVPVIKELPIIREVPVVXTLXIGHPGP-XPIXDTVHV 293
V+ +P+I+ +PV + +PII+ +P+V + + P + TV V
Sbjct: 7 VRVIPVIRVIPVTRVIPIIQVIPIVRVIPVTRVIPIVQVISTVRV 51
Score = 31.1 bits (67), Expect = 0.53
Identities = 9/27 (33%), Positives = 20/27 (74%)
Frame = +3
Query: 171 VPIIKEVPVIKELPIIREVPVVXTLXI 251
+PI++ P+++ +P+IR +P+V + I
Sbjct: 130 IPIVRVNPIVRVIPVIRVIPIVQVISI 156
Score = 31.1 bits (67), Expect = 0.53
Identities = 9/30 (30%), Positives = 22/30 (73%)
Frame = +3
Query: 162 VQKVPIIKEVPVIKELPIIREVPVVXTLXI 251
V+ +P+I+ +P+++ + I+R +PVV + +
Sbjct: 139 VRVIPVIRVIPIVQVISIVRVIPVVRVIPV 168
Score = 30.3 bits (65), Expect = 0.92
Identities = 9/27 (33%), Positives = 20/27 (74%)
Frame = +3
Query: 171 VPIIKEVPVIKELPIIREVPVVXTLXI 251
+PI++ + +++ +PIIR +P+V + I
Sbjct: 94 IPIVQVISIVRVIPIIRVIPIVRVILI 120
Score = 29.5 bits (63), Expect = 1.6
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +3
Query: 162 VQKVPIIKEVPVIKELPIIREVPVVXTLXI 251
V +P+ + +P+++ PI+R +PV+ + I
Sbjct: 121 VLDIPLTRVIPIVRVNPIVRVIPVIRVIPI 150
Score = 29.1 bits (62), Expect = 2.1
Identities = 7/25 (28%), Positives = 20/25 (80%)
Frame = +3
Query: 162 VQKVPIIKEVPVIKELPIIREVPVV 236
++ +PI++ + +++ +P++R +PVV
Sbjct: 145 IRVIPIVQVISIVRVIPVVRVIPVV 169
Score = 28.7 bits (61), Expect = 2.8
Identities = 7/30 (23%), Positives = 21/30 (70%)
Frame = +3
Query: 162 VQKVPIIKEVPVIKELPIIREVPVVXTLXI 251
V+ +P+ + +P+++ + I+R +P++ + I
Sbjct: 85 VRVIPVTRVIPIVQVISIVRVIPIIRVIPI 114
Score = 28.3 bits (60), Expect = 3.7
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = +3
Query: 162 VQKVPIIKEVPVIKELPIIREVPVVXTLXI 251
VQ + I++ +P+I+ +PI+R + +V + +
Sbjct: 97 VQVISIVRVIPIIRVIPIVRVILIVLDIPL 126
Score = 28.3 bits (60), Expect = 3.7
Identities = 9/35 (25%), Positives = 22/35 (62%)
Frame = +3
Query: 162 VQKVPIIKEVPVIKELPIIREVPVVXTLXIGHPGP 266
V+ +PII+ +P+++ + I+ ++P+ + I P
Sbjct: 103 VRVIPIIRVIPIVRVILIVLDIPLTRVIPIVRVNP 137
Score = 27.9 bits (59), Expect = 4.9
Identities = 8/26 (30%), Positives = 19/26 (73%)
Frame = +3
Query: 174 PIIKEVPVIKELPIIREVPVVXTLXI 251
PI++ +PVI+ +PI++ + +V + +
Sbjct: 137 PIVRVIPVIRVIPIVQVISIVRVIPV 162
Score = 27.5 bits (58), Expect = 6.5
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = +3
Query: 162 VQKVPIIKEVPVIKELPIIREVPVVXTLXI 251
+Q +PI++ +PV + +PI++ + V +
Sbjct: 25 IQVIPIVRVIPVTRVIPIVQVISTVRVFPV 54
Score = 27.5 bits (58), Expect = 6.5
Identities = 7/22 (31%), Positives = 18/22 (81%)
Frame = +3
Query: 162 VQKVPIIKEVPVIKELPIIREV 227
VQ + I++ +PV++ +P++R++
Sbjct: 151 VQVISIVRVIPVVRVIPVVRDI 172
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +3
Query: 162 VQKVPIIKEVPVIKELPIIREVPVVXTLXIGHPGPXPIXDTVHVXKTXVLPFLSI 326
V+ P+I+ + +++ + I+R +PV+ + I PI + V T V+P + +
Sbjct: 49 VRVFPVIRVITIVQVISIVRVIPVIRNIPIFR--VIPIVRVIPV--TRVIPIVQV 99
>SB_46646| Best HMM Match : zf-AD (HMM E-Value=0.51)
Length = 287
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = -3
Query: 191 NFFYDRHFLNVRVVMVQSMHFVRYVDPEMCDFSVTKRLWLWQRVSQAHGDRGSQDENDF 15
N F+ + R+ Q++ V +V+P C+F +W Q + + + S + N+F
Sbjct: 72 NRFFSHDVSHARMTC-QNVRLVLHVNPTSCEFRSFAAIWQQQMDTTVNSAKSSFNPNNF 129
>SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)
Length = 918
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 272 HXGHSPRXKNXGLALPEHLRYSHWH*R 352
H GH+P +LP H SH H R
Sbjct: 528 HQGHAPSRLKPSTSLPPHASSSHGHER 554
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,605,073
Number of Sequences: 59808
Number of extensions: 261284
Number of successful extensions: 683
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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