Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313C04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    27   1.3  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    27   1.3  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   1.7  
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    25   5.2  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    25   6.8  

>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 206 LQVSANLRNALPLIITQIYEFSRVDFPYRM 295
           LQV  N    +P +IT+I   SR  FP R+
Sbjct: 317 LQVKRNSNMQVPPVITEIVSGSRAAFPLRL 346


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -3

Query: 165 VRRDWDSRYAVRQLRFQPHVSRKVPVLTYLVMSMGSGW*PLNIGWA 28
           + +++DSRY +     QP   ++V   +YL  S+ S   PL++G+A
Sbjct: 384 IYKNYDSRYPLIDEVIQPGPYKEVLPCSYLCYSLASSC-PLDLGFA 428


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = -2

Query: 217  TNLQVPAIPPISAVKHSSPKRLGQPICSKTVEISTSCLKEGAGTYLLGD 71
            T  Q+P  PP+S    SS      PI +     ST+       TY  GD
Sbjct: 1067 TRPQIPQPPPVSTALPSSSAVSRPPIATSAGRSSTAASTSAPLTYPAGD 1115


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 138 AVRQLRFQPHVSRKVPVLTYLV 73
           A+RQL++QP  + K P+  Y V
Sbjct: 199 AIRQLKYQPQKNNKPPLWLYEV 220


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 209 QVSANLRNALPLIITQIYEFSRVDFPYRMLFLY 307
           QV  +L +A  + I  +YE   VD  YR+ F++
Sbjct: 73  QVLKSLLHAATIFIGPLYEVWIVDKEYRLFFIH 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,970
Number of Sequences: 5004
Number of extensions: 48296
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)