Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313C04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_1030 - 13536511-13537929                                         29   3.0  
01_03_0017 + 11677029-11677100,11677992-11678030,11678169-116783...    29   3.0  
07_03_1721 - 29023979-29025295                                         27   6.9  
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422...    27   9.1  
07_01_0101 - 752935-753223,753311-753408,753674-753764,753844-75...    27   9.1  
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937...    27   9.1  

>03_02_1030 - 13536511-13537929
          Length = 472

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 199 AIPPISAVKHSSPKRLGQPICSKTVEIS-TSCLKEGAGTYLLGDVNG 62
           A+PPI  +  +SP  L     +    I+ TSC ++G   YL+ DV G
Sbjct: 100 AVPPIPNLPDASPAPLTYVEAAGDGLIALTSCFRDGCSCYLVYDVVG 146


>01_03_0017 +
           11677029-11677100,11677992-11678030,11678169-11678341,
           11679068-11679284,11679518-11679688,11679781-11679941,
           11680025-11681069,11681320-11681466,11681547-11681774,
           11681863-11682020,11682124-11682493
          Length = 926

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 175 KHSSPKRLGQPICSKTVEISTSCLK 101
           +H  P+    PICSK V +STS LK
Sbjct: 848 QHKRPEMKVCPICSKNVGLSTSSLK 872


>07_03_1721 - 29023979-29025295
          Length = 438

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 452 YGLYVLNQIRHFKKSCQQ 505
           Y  Y +NQ RHF KSCQ+
Sbjct: 85  YNNYNINQPRHFCKSCQR 102


>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
            11242381-11242449,11242551-11243480,11243868-11243906,
            11244414-11244478,11244663-11244768,11244850-11245050,
            11247001-11247201,11247756-11247779,11249425-11249586,
            11249676-11249915,11250267-11250479,11250618-11250968,
            11251041-11251193,11251649-11251858,11252049-11252267,
            11252365-11252482,11252879-11253828,11254023-11254220,
            11254294-11254553,11255316-11255505,11255817-11256169,
            11258278-11258386,11258466-11258615,11258748-11258844,
            11259315-11259415
          Length = 2065

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = -3

Query: 237  RAFRKFALTCKCLPSRLFLP*NIPVRRDWDSRYA--VRQLRFQPHVSRKVPVLTYLVMSM 64
            RA   F L C      L  P N+ V  DW+  Y   ++    +  V  +V V+   +M M
Sbjct: 1038 RAREGFVLACDLHLVYLVTPINVDVEPDWELYYERFMQLTSLEQSVGNRVGVIEPFLMHM 1097

Query: 63   GSG 55
              G
Sbjct: 1098 AHG 1100


>07_01_0101 -
           752935-753223,753311-753408,753674-753764,753844-753882,
           754019-754110,754535-754634,754742-754828,754949-755250,
           756036-756242,756319-756405,756978-757058,757257-757365,
           758037-758093,758188-758258,758414-758521,758874-758974,
           759111-759177,759434-759535,759618-759662,759916-760511,
           761956-762065,762165-762280
          Length = 984

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 25  HSPSDIEWLPTRAH*HHQVGKYR 93
           H  S+IE L  RA  HH +G+Y+
Sbjct: 470 HESSNIECLYLRASCHHAIGEYK 492


>01_01_1176 -
           9372879-9373097,9373814-9374278,9374372-9375447,
           9375534-9375687,9375783-9375879,9376238-9376374
          Length = 715

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +2

Query: 146 LSQSLRTGMFHGRNRRDGRHLQVSANLRNALPLIITQIYEFSRVDFPYRML 298
           ++ +LR+  +H RN +  R LQ    LR        +IYEFSR++  Y +L
Sbjct: 400 VTHALRSSEYHDRNAQYYRILQ-EMGLRRV------EIYEFSRLNMVYTVL 443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,979,610
Number of Sequences: 37544
Number of extensions: 287876
Number of successful extensions: 569
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)