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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313C04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57615| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_48343| Best HMM Match : CBF (HMM E-Value=1.3)                       29   2.3  
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)                      27   7.1  
SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_56700| Best HMM Match : rve (HMM E-Value=1.1e-11)                   27   9.4  
SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21)                 27   9.4  
SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_30812| Best HMM Match : RVT_1 (HMM E-Value=1.2e-40)                 27   9.4  
SB_27128| Best HMM Match : PADR1 (HMM E-Value=8.3)                     27   9.4  
SB_11753| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   9.4  
SB_7615| Best HMM Match : RVT_1 (HMM E-Value=1e-33)                    27   9.4  
SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)                   27   9.4  
SB_24534| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   9.4  
SB_24050| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_20057| Best HMM Match : RVT_1 (HMM E-Value=3e-13)                   27   9.4  
SB_16972| Best HMM Match : Ribosomal_60s (HMM E-Value=0.51)            27   9.4  
SB_1851| Best HMM Match : RVT_1 (HMM E-Value=3.2e-16)                  27   9.4  

>SB_57615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 197 GRHLQVSANLRNALPLIITQIYEFSRVDFPYRMLFLYYESRSR 325
           G  L++     N   ++I   +E  R+D P++MLF  Y+   R
Sbjct: 9   GVRLRIIRGRSNGCHVVIECSFELLRLDTPFKMLFRVYQDHVR 51


>SB_48343| Best HMM Match : CBF (HMM E-Value=1.3)
          Length = 669

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 139 CSKTVEISTSCLKEGAGTYLLGDVNGLWL 53
           CS T  ++TS + + +   LLGDV+G  L
Sbjct: 226 CSSTYTVTTSQISDASDALLLGDVDGFLL 254


>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 124 QLSYCISAVPISSDWNVSR 180
           +L  CIS  P+ SDWN SR
Sbjct: 620 RLRTCISVFPLRSDWNRSR 638


>SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 879

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -3

Query: 213 TCKCLPSRLFLP*NIPVRRDWDSRYAVRQLRFQP---HVSRKVPVLTYL 76
           +C+C+P R+ +    P R D D        RF P   H+S   P+L ++
Sbjct: 252 SCRCVPHRVLMSMCSPSRADVDVFPITCSCRFVPHRIHISMCSPILAHV 300


>SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1806

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 417 CTCIN*Y*LCWYSYNAGSYQFFKLNKYITDF 325
           C C+N   L WYS +   +Q   +  Y  DF
Sbjct: 90  CDCVNISELTWYSLSGYKFQLIVIADYDDDF 120


>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2973

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 121 SQLSYCISAVPISSDWN 171
           S+L  CIS  P+ SDWN
Sbjct: 200 SRLQSCISVFPLRSDWN 216


>SB_56700| Best HMM Match : rve (HMM E-Value=1.1e-11)
          Length = 1140

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 121 SQLSYCISAVPISSDWN 171
           S+L  CIS  P+ SDWN
Sbjct: 307 SRLRSCISVFPLRSDWN 323


>SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21)
          Length = 1080

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 11  WINEVTAHPILSGYQPEPIDITK*VSTGTFL 103
           W+   T   ++ G   +P+D+T  V  GT L
Sbjct: 618 WLTNRTQRVVVDGVSSKPVDVTSGVPQGTVL 648


>SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1881

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 121 SQLSYCISAVPISSDWN 171
           S+L  CIS  P+ SDWN
Sbjct: 674 SRLRTCISVFPLRSDWN 690


>SB_30812| Best HMM Match : RVT_1 (HMM E-Value=1.2e-40)
          Length = 325

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 11  WINEVTAHPILSGYQPEPIDITK*VSTGTFL 103
           W+   T   ++ G   +P+D+T  V  GT L
Sbjct: 219 WLTNRTQRVVVDGVSSKPVDVTSGVPQGTVL 249


>SB_27128| Best HMM Match : PADR1 (HMM E-Value=8.3)
          Length = 242

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 11  WINEVTAHPILSGYQPEPIDITK*VSTGTFL 103
           W+   T   ++ G   +P+D+T  V  GT L
Sbjct: 38  WLTNRTQRVVVDGVSSKPVDVTSGVPQGTVL 68


>SB_11753| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 393

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 11  WINEVTAHPILSGYQPEPIDITK*VSTGTFL 103
           W+   T   ++ G   +P+D+T  V  GT L
Sbjct: 219 WLTNRTQRVVVDGVSSKPVDVTSGVPQGTVL 249


>SB_7615| Best HMM Match : RVT_1 (HMM E-Value=1e-33)
          Length = 363

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 11  WINEVTAHPILSGYQPEPIDITK*VSTGTFL 103
           W+   T   ++ G   +P+D+T  V  GT L
Sbjct: 159 WLTNRTQRVVVDGVSSKPVDVTSGVPQGTVL 189


>SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)
          Length = 2008

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +1

Query: 109  MRLKSQLSYC--ISAVPISSDWNVSRQK*AGWQALAG*CELTKCPTTNYYANLRI 267
            ++ K++ + C  ISA  I+ +W VS    A  +A+ G  + TK   T   ANL+I
Sbjct: 866  IKAKAEAASCSNISAPKINFEWRVSCADSAAKEAIEGNADFTKTKNT---ANLQI 917


>SB_24534| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 423

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 11  WINEVTAHPILSGYQPEPIDITK*VSTGTFL 103
           W+   T   ++ G   +P+D+T  V  GT L
Sbjct: 219 WLTNRTQRVVVDGVSSKPVDVTSGVPQGTVL 249


>SB_24050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 121 SQLSYCISAVPISSDWN 171
           S+L  CIS  P+ SDWN
Sbjct: 608 SRLRSCISVFPLRSDWN 624


>SB_20057| Best HMM Match : RVT_1 (HMM E-Value=3e-13)
          Length = 269

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 11  WINEVTAHPILSGYQPEPIDITK*VSTGTFL 103
           W+   T   ++ G   +P+D+T  V  GT L
Sbjct: 83  WLTNRTQRVVVDGVSSKPVDVTSVVPQGTVL 113


>SB_16972| Best HMM Match : Ribosomal_60s (HMM E-Value=0.51)
          Length = 1275

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 121 SQLSYCISAVPISSDWN 171
           S+L  CIS  P+ SDWN
Sbjct: 475 SRLRTCISVFPLRSDWN 491


>SB_1851| Best HMM Match : RVT_1 (HMM E-Value=3.2e-16)
          Length = 287

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 11  WINEVTAHPILSGYQPEPIDITK*VSTGTFL 103
           W+   T   ++ G   +P+D+T  V  GT L
Sbjct: 83  WLTNRTQRVVVDGVSSKPVDVTSGVPQGTVL 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,622,449
Number of Sequences: 59808
Number of extensions: 349121
Number of successful extensions: 679
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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