BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS313C04f (521 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_57615| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3 SB_48343| Best HMM Match : CBF (HMM E-Value=1.3) 29 2.3 SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0) 27 7.1 SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_56700| Best HMM Match : rve (HMM E-Value=1.1e-11) 27 9.4 SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21) 27 9.4 SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 SB_30812| Best HMM Match : RVT_1 (HMM E-Value=1.2e-40) 27 9.4 SB_27128| Best HMM Match : PADR1 (HMM E-Value=8.3) 27 9.4 SB_11753| Best HMM Match : RVT_1 (HMM E-Value=0) 27 9.4 SB_7615| Best HMM Match : RVT_1 (HMM E-Value=1e-33) 27 9.4 SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07) 27 9.4 SB_24534| Best HMM Match : RVT_1 (HMM E-Value=0) 27 9.4 SB_24050| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 SB_20057| Best HMM Match : RVT_1 (HMM E-Value=3e-13) 27 9.4 SB_16972| Best HMM Match : Ribosomal_60s (HMM E-Value=0.51) 27 9.4 SB_1851| Best HMM Match : RVT_1 (HMM E-Value=3.2e-16) 27 9.4 >SB_57615| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 59 Score = 29.1 bits (62), Expect = 2.3 Identities = 13/43 (30%), Positives = 22/43 (51%) Frame = +2 Query: 197 GRHLQVSANLRNALPLIITQIYEFSRVDFPYRMLFLYYESRSR 325 G L++ N ++I +E R+D P++MLF Y+ R Sbjct: 9 GVRLRIIRGRSNGCHVVIECSFELLRLDTPFKMLFRVYQDHVR 51 >SB_48343| Best HMM Match : CBF (HMM E-Value=1.3) Length = 669 Score = 29.1 bits (62), Expect = 2.3 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -2 Query: 139 CSKTVEISTSCLKEGAGTYLLGDVNGLWL 53 CS T ++TS + + + LLGDV+G L Sbjct: 226 CSSTYTVTTSQISDASDALLLGDVDGFLL 254 >SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2209 Score = 27.9 bits (59), Expect = 5.4 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +1 Query: 124 QLSYCISAVPISSDWNVSR 180 +L CIS P+ SDWN SR Sbjct: 620 RLRTCISVFPLRSDWNRSR 638 >SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0) Length = 879 Score = 27.5 bits (58), Expect = 7.1 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%) Frame = -3 Query: 213 TCKCLPSRLFLP*NIPVRRDWDSRYAVRQLRFQP---HVSRKVPVLTYL 76 +C+C+P R+ + P R D D RF P H+S P+L ++ Sbjct: 252 SCRCVPHRVLMSMCSPSRADVDVFPITCSCRFVPHRIHISMCSPILAHV 300 >SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1806 Score = 27.5 bits (58), Expect = 7.1 Identities = 11/31 (35%), Positives = 15/31 (48%) Frame = -3 Query: 417 CTCIN*Y*LCWYSYNAGSYQFFKLNKYITDF 325 C C+N L WYS + +Q + Y DF Sbjct: 90 CDCVNISELTWYSLSGYKFQLIVIADYDDDF 120 >SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2973 Score = 27.5 bits (58), Expect = 7.1 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +1 Query: 121 SQLSYCISAVPISSDWN 171 S+L CIS P+ SDWN Sbjct: 200 SRLQSCISVFPLRSDWN 216 >SB_56700| Best HMM Match : rve (HMM E-Value=1.1e-11) Length = 1140 Score = 27.1 bits (57), Expect = 9.4 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +1 Query: 121 SQLSYCISAVPISSDWN 171 S+L CIS P+ SDWN Sbjct: 307 SRLRSCISVFPLRSDWN 323 >SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21) Length = 1080 Score = 27.1 bits (57), Expect = 9.4 Identities = 10/31 (32%), Positives = 16/31 (51%) Frame = +2 Query: 11 WINEVTAHPILSGYQPEPIDITK*VSTGTFL 103 W+ T ++ G +P+D+T V GT L Sbjct: 618 WLTNRTQRVVVDGVSSKPVDVTSGVPQGTVL 648 >SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1881 Score = 27.1 bits (57), Expect = 9.4 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +1 Query: 121 SQLSYCISAVPISSDWN 171 S+L CIS P+ SDWN Sbjct: 674 SRLRTCISVFPLRSDWN 690 >SB_30812| Best HMM Match : RVT_1 (HMM E-Value=1.2e-40) Length = 325 Score = 27.1 bits (57), Expect = 9.4 Identities = 10/31 (32%), Positives = 16/31 (51%) Frame = +2 Query: 11 WINEVTAHPILSGYQPEPIDITK*VSTGTFL 103 W+ T ++ G +P+D+T V GT L Sbjct: 219 WLTNRTQRVVVDGVSSKPVDVTSGVPQGTVL 249 >SB_27128| Best HMM Match : PADR1 (HMM E-Value=8.3) Length = 242 Score = 27.1 bits (57), Expect = 9.4 Identities = 10/31 (32%), Positives = 16/31 (51%) Frame = +2 Query: 11 WINEVTAHPILSGYQPEPIDITK*VSTGTFL 103 W+ T ++ G +P+D+T V GT L Sbjct: 38 WLTNRTQRVVVDGVSSKPVDVTSGVPQGTVL 68 >SB_11753| Best HMM Match : RVT_1 (HMM E-Value=0) Length = 393 Score = 27.1 bits (57), Expect = 9.4 Identities = 10/31 (32%), Positives = 16/31 (51%) Frame = +2 Query: 11 WINEVTAHPILSGYQPEPIDITK*VSTGTFL 103 W+ T ++ G +P+D+T V GT L Sbjct: 219 WLTNRTQRVVVDGVSSKPVDVTSGVPQGTVL 249 >SB_7615| Best HMM Match : RVT_1 (HMM E-Value=1e-33) Length = 363 Score = 27.1 bits (57), Expect = 9.4 Identities = 10/31 (32%), Positives = 16/31 (51%) Frame = +2 Query: 11 WINEVTAHPILSGYQPEPIDITK*VSTGTFL 103 W+ T ++ G +P+D+T V GT L Sbjct: 159 WLTNRTQRVVVDGVSSKPVDVTSGVPQGTVL 189 >SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07) Length = 2008 Score = 27.1 bits (57), Expect = 9.4 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%) Frame = +1 Query: 109 MRLKSQLSYC--ISAVPISSDWNVSRQK*AGWQALAG*CELTKCPTTNYYANLRI 267 ++ K++ + C ISA I+ +W VS A +A+ G + TK T ANL+I Sbjct: 866 IKAKAEAASCSNISAPKINFEWRVSCADSAAKEAIEGNADFTKTKNT---ANLQI 917 >SB_24534| Best HMM Match : RVT_1 (HMM E-Value=0) Length = 423 Score = 27.1 bits (57), Expect = 9.4 Identities = 10/31 (32%), Positives = 16/31 (51%) Frame = +2 Query: 11 WINEVTAHPILSGYQPEPIDITK*VSTGTFL 103 W+ T ++ G +P+D+T V GT L Sbjct: 219 WLTNRTQRVVVDGVSSKPVDVTSGVPQGTVL 249 >SB_24050| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1092 Score = 27.1 bits (57), Expect = 9.4 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +1 Query: 121 SQLSYCISAVPISSDWN 171 S+L CIS P+ SDWN Sbjct: 608 SRLRSCISVFPLRSDWN 624 >SB_20057| Best HMM Match : RVT_1 (HMM E-Value=3e-13) Length = 269 Score = 27.1 bits (57), Expect = 9.4 Identities = 10/31 (32%), Positives = 16/31 (51%) Frame = +2 Query: 11 WINEVTAHPILSGYQPEPIDITK*VSTGTFL 103 W+ T ++ G +P+D+T V GT L Sbjct: 83 WLTNRTQRVVVDGVSSKPVDVTSVVPQGTVL 113 >SB_16972| Best HMM Match : Ribosomal_60s (HMM E-Value=0.51) Length = 1275 Score = 27.1 bits (57), Expect = 9.4 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +1 Query: 121 SQLSYCISAVPISSDWN 171 S+L CIS P+ SDWN Sbjct: 475 SRLRTCISVFPLRSDWN 491 >SB_1851| Best HMM Match : RVT_1 (HMM E-Value=3.2e-16) Length = 287 Score = 27.1 bits (57), Expect = 9.4 Identities = 10/31 (32%), Positives = 16/31 (51%) Frame = +2 Query: 11 WINEVTAHPILSGYQPEPIDITK*VSTGTFL 103 W+ T ++ G +P+D+T V GT L Sbjct: 83 WLTNRTQRVVVDGVSSKPVDVTSGVPQGTVL 113 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,622,449 Number of Sequences: 59808 Number of extensions: 349121 Number of successful extensions: 679 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 624 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 678 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1172759136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -