Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313C04f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC010876-1|AAH10876.1|  390|Homo sapiens NEIL1 protein protein.        29   7.5  
AY257544-1|AAO74826.1|  390|Homo sapiens nei endonuclease VIII-l...    29   7.5  
AK026055-1|BAB15337.1|  390|Homo sapiens protein ( Homo sapiens ...    29   7.5  
AB079068-1|BAC06476.1|  390|Homo sapiens endonuclease VIII protein.    29   7.5  

>BC010876-1|AAH10876.1|  390|Homo sapiens NEIL1 protein protein.
          Length = 390

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = +3

Query: 192 GMAGTCRLVRTYEMPYH*LLRKFTNFPGLIFLTGCYFFIMKVGRENL 332
           GM+G+ +LV   E+P H  LR +T  PG   L  C+  I + GR +L
Sbjct: 80  GMSGSFQLVPREELPRHAHLRFYTAPPG-PRLALCFVDIRRFGRWDL 125


>AY257544-1|AAO74826.1|  390|Homo sapiens nei endonuclease VIII-like
           1 (E. coli) protein.
          Length = 390

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = +3

Query: 192 GMAGTCRLVRTYEMPYH*LLRKFTNFPGLIFLTGCYFFIMKVGRENL 332
           GM+G+ +LV   E+P H  LR +T  PG   L  C+  I + GR +L
Sbjct: 80  GMSGSFQLVPREELPRHAHLRFYTAPPG-PRLALCFVDIRRFGRWDL 125


>AK026055-1|BAB15337.1|  390|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22402 fis, clone HRC08117. ).
          Length = 390

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = +3

Query: 192 GMAGTCRLVRTYEMPYH*LLRKFTNFPGLIFLTGCYFFIMKVGRENL 332
           GM+G+ +LV   E+P H  LR +T  PG   L  C+  I + GR +L
Sbjct: 80  GMSGSFQLVPREELPRHAHLRFYTAPPG-PRLALCFVDIRRFGRWDL 125


>AB079068-1|BAC06476.1|  390|Homo sapiens endonuclease VIII protein.
          Length = 390

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = +3

Query: 192 GMAGTCRLVRTYEMPYH*LLRKFTNFPGLIFLTGCYFFIMKVGRENL 332
           GM+G+ +LV   E+P H  LR +T  PG   L  C+  I + GR +L
Sbjct: 80  GMSGSFQLVPREELPRHAHLRFYTAPPG-PRLALCFVDIRRFGRWDL 125


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,107,260
Number of Sequences: 237096
Number of extensions: 1643896
Number of successful extensions: 2527
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2527
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)