Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313C04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.5  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   3.3  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   4.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   5.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.8  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -2

Query: 175 KHSSPKRLGQP--ICSKTVEISTSCLKEGAGTYL 80
           KH +PK LGQP  +      +S   + E + TY+
Sbjct: 19  KHRAPKFLGQPTIVYFHVTVLSIDSINEESMTYV 52


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 242 LIITQIYEFSRVDFPYRMLFLYYESRSRKSVMYLFNLKNW 361
           L +T  Y     DFP+   F+   SR   S  +   + NW
Sbjct: 291 LSMTMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLIDNW 330


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 242 LIITQIYEFSRVDFPYRMLFLYYESRSRKSVMYLFNLKNW 361
           L +T  Y     DFP+   F+   SR   S  +   + NW
Sbjct: 291 LSMTMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLVDNW 330


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 48  PLNIGWAVT 22
           PL IGWA+T
Sbjct: 93  PLEIGWAIT 101


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 279 STRENS*ICVIISGRAFRKFALTCKCLPS 193
           ST  N  +  ++S +    F  TC+C PS
Sbjct: 308 STTINPILYNVMSAKYRNAFKETCRCSPS 336


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 234 AFRKFALTCKCLPSRLF-LP*NIPVRRDWDSRYAVRQLRFQPHVSRKVPVL 85
           A  K A   K +P  L  L  N+ +    +++YA++   F  H+  K+P L
Sbjct: 854 AAEKIAEELKIVPEELVPLEGNLMI----NNKYALKFFPFDKHILDKLPTL 900


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,073
Number of Sequences: 438
Number of extensions: 3242
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)