Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313C04f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15180.1 68417.m02328 SET domain-containing protein contains ...    30   1.1  
At5g63110.1 68418.m07923 histone deacetylase, putative similar t...    27   5.8  
At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family p...    27   7.7  
At3g11600.1 68416.m01418 expressed protein weak similarity to B-...    27   7.7  
At3g10000.1 68416.m01200 DNA-binding protein-related similar to ...    27   7.7  

>At4g15180.1 68417.m02328 SET domain-containing protein contains
           Pfam profile PF00856: SET domain
          Length = 2326

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 4   AFLDKRGHSPSDIEWLPTRAH*HHQ 78
           AF DK GHSPS  +W P     +H+
Sbjct: 416 AFSDKHGHSPSRSDWSPHDRSRYHE 440


>At5g63110.1 68418.m07923 histone deacetylase, putative similar to
           SP|O22446 Histone deacetylase (HD) {Arabidopsis
           thaliana}; contains Pfam profile PF00850: Histone
           deacetylase family
          Length = 471

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 129 VLLHIGCPNLFG--LECFTAEIGGMAGTCRLVRTYEMP 236
           V+L  G  +L G  L CF   + G A   R +R+Y +P
Sbjct: 269 VVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSYNVP 306


>At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family
           protein similar to SP|Q9Y672 Dolichyl pyrophosphate
           Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC 2.4.1.-)
           (Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl
           glucosyltransferase) {Homo sapiens}; contains Pfam
           profile PF03155: ALG6, ALG8 glycosyltransferase family
          Length = 533

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 258 FTNFPGLIFLTGCYFFIMKV 317
           F NFPG +FL   +FFI  V
Sbjct: 456 FKNFPGYVFLLRTHFFISVV 475


>At3g11600.1 68416.m01418 expressed protein weak similarity to
           B-type cyclin (GI:849074) [Nicotiana tabacum]
          Length = 117

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 54  NQSPLTSPSR*VPAPSLRHEVEISTVLLHIGCP 152
           N+S  TSPS  V + + + E E  T ++ +GCP
Sbjct: 34  NRSNTTSPSSCVSSETNQEENETITSMVLVGCP 66


>At3g10000.1 68416.m01200 DNA-binding protein-related similar to
           GT-2 factor [Arabidopsis thaliana GI:416490
          Length = 496

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -2

Query: 169 SSPKRLGQPICSKTVEISTSC--LKEGAGTYLLGDVNGL 59
           S+ K  G P CS  +  ST C  L EG G   L +  GL
Sbjct: 449 SNSKNAGTPSCSNAMAASTKCFPLLEGEGDQNLWEGYGL 487


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,506,760
Number of Sequences: 28952
Number of extensions: 239011
Number of successful extensions: 486
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)