Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313C03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 113 2e-26
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 42 6e-05
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 42 6e-05
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 27 1.3
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 2.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 3.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.9
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 25 5.2
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 25 5.2
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 25 5.2
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 25 5.2
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 25 5.2
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 25 5.2
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom... 25 5.2
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 6.8
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 25 9.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 9.0
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 25 9.0
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 113 bits (272), Expect = 2e-26
Identities = 56/135 (41%), Positives = 83/135 (61%)
Frame = -3
Query: 516 VSGVKFRLQDGAHHIVDSSELAFFLAAKGAVKDVFDVGAWQILEPVMFVEVTLPDEFHGT 337
+ +F L+DGA+H VDSSELAF LA A + F +LEP+M V +T P E G
Sbjct: 633 IKNCRFVLEDGAYHPVDSSELAFRLATISAFRTAFLQANPMVLEPIMNVSITAPVEHQGG 692
Query: 336 VVGQLNKRXXXXXXXXXXXGWTSIYAEVPLNNMFGYAGELRSMTQGKGEFSMEYSRYSPC 157
V+G L+KR ++ AEVPLN+MF Y+ ++R++T+GKGEFSME+ +Y P
Sbjct: 693 VIGNLDKRKATIVDSDTDEDEFTLQAEVPLNSMFSYSSDIRALTKGKGEFSMEFLKYLPA 752
Query: 156 LPDVQEQLIRKHQEE 112
VQ++L+ + ++
Sbjct: 753 PKYVQKELVDAYNKQ 767
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 41.9 bits (94), Expect = 6e-05
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = -3
Query: 393 ILEPVMFVEVTLPDEFHGTVVGQLNKRXXXXXXXXXXXGWT--SIYAEVPLNNMFGYAGE 220
I EPV VE+ + + G + LNK+ G +I A +P+N FG+ GE
Sbjct: 724 IQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGE 783
Query: 219 LRSMTQGKGEFSMEYSRYSPCLPD 148
LR T G+ + + +SP D
Sbjct: 784 LRQATAGQAFPQLVFDHWSPMSGD 807
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 41.9 bits (94), Expect = 6e-05
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = -3
Query: 393 ILEPVMFVEVTLPDEFHGTVVGQLNKRXXXXXXXXXXXGWT--SIYAEVPLNNMFGYAGE 220
I EPV VE+ + + G + LNK+ G +I A +P+N FG+ GE
Sbjct: 724 IQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGE 783
Query: 219 LRSMTQGKGEFSMEYSRYSPCLPD 148
LR T G+ + + +SP D
Sbjct: 784 LRQATAGQAFPQLVFDHWSPMSGD 807
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -3
Query: 441 AAKGAVKDVFDVG--AWQILEPVMFVEVTLPDEFHGTV 334
A K AV ++ +++ILEP M V +T P+E+ G V
Sbjct: 652 ATKNAVFSLYKRSPKSFRILEPYMDVTITTPEEYVGIV 689
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 267 IYAEVPLNNMFGYAGELRSMTQGKGEFSMEY 175
I A+VPL + Y + S+T+G +F M +
Sbjct: 754 IRAQVPLEQILDYNSVISSLTKGNAKFLMSH 784
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 2.2
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Frame = +2
Query: 317 LFSCPTTVPWNS------SGNVTSTNMTGSSICHAPTSK-TSLTAPLAAKKNASSLEST 472
L S PTT+ +S S NVT+TN SS+ + +S T +++ + + ++S+L S+
Sbjct: 533 LSSFPTTIVSSSFQYSSLSSNVTTTNAQSSSLSSSNSSALTHISSSIVSSGSSSALSSS 591
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 317 LFSCPTTVPWNSSGNVTSTNMTGSSICHAPTSKTSLTAPLAAKKNASSLES 469
L S TT +S ++TS+++ SSI + + +S T+ A + +S S
Sbjct: 119 LASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTS 169
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 329 PTTVPWNSSGNVTSTNMTGSSICHAPTSKTSLTAPLAAKKNASSLES 469
PT P +SS +T+TN T S+ P + T +T+ A N ++ S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTST--SVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 273 TSIYAEVPLNNMFGYAGELRSMTQGKGEFSMEYSRYS 163
TSI+ + +N Y R MT EF+++ YS
Sbjct: 46 TSIWKTILINETGSYCVAARPMTMDGAEFNLDLMGYS 82
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 25.4 bits (53), Expect = 5.2
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Frame = -3
Query: 405 GAWQILEPVMFVEVTLPDEFHGTVVGQLNK-RXXXXXXXXXXXGWTSIYAEVPLNNMF-G 232
G ++LEP + + P E+ G V+ R I ++PL ++
Sbjct: 448 GISELLEPTVDATIITPSEYLGDVIKLCESCRGLQKDCTYMSESRCMIKYQLPLAHLVED 507
Query: 231 YAGELRSMTQGKGEFSMEYSRYSP 160
+ G L+ T G E S Y P
Sbjct: 508 FFGRLKGTTSGFATLDYEESDYVP 531
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 273 TSIYAEVPLNNMFGYAGELRSMTQGKGEFSMEYSRYS 163
TSI+ + +N Y R MT EF+++ YS
Sbjct: 46 TSIWKTILINETGSYCVAARPMTMDGAEFNLDLMGYS 82
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 273 TSIYAEVPLNNMFGYAGELRSMTQGKGEFSMEYSRYS 163
TSI+ + +N Y R MT EF+++ YS
Sbjct: 18 TSIWKTILINETGSYCVAARPMTMDGAEFNLDLMGYS 54
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 273 TSIYAEVPLNNMFGYAGELRSMTQGKGEFSMEYSRYS 163
TSI+ + +N Y R MT EF+++ YS
Sbjct: 46 TSIWKTILINETGSYCVAARPMTMDGAEFNLDLMGYS 82
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -1
Query: 470 WTPASWHSSWQLRGPSRMFSTWERGRYLNRS 378
W S +S+W+L + W+R +L R+
Sbjct: 609 WVQHSKNSAWRLNSSNAKIEQWKRNSWLLRT 639
>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 397
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 183 MEYSRYSPCLPDVQEQLIRKHQEEMGLLPDQKKKKN*RPSK 61
+EYSR P+ E+LI+ ++ + Q KKK + SK
Sbjct: 356 VEYSRKEITDPEFAEKLIKAADAQIDEVEKQYKKKKIKKSK 396
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 347 NSSGNVTSTNMTGSSICHAPTSKTSLT 427
N + + ST+ T S+ PTS SLT
Sbjct: 244 NGTNSTNSTSTTSHSLTKLPTSSKSLT 270
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -3
Query: 477 HIVDSSELAFFLAAKGAVKDVFDVGAW 397
H+ D+ E F L VFD+G W
Sbjct: 253 HLFDAVEEVFILQDPNVEASVFDLGDW 279
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 332 TTVPWNSSGNV-TSTNMTGSSICHAPTSKTSLTA 430
++ P SS V TST +T S++ ++ T TSLTA
Sbjct: 2540 SSTPITSSTVVNTSTPITSSTVVNSSTPITSLTA 2573
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 365 TSTNMTGSSICHAPTSKTSLTAPLAAKKNA 454
T +N S ++ T SL AP+A KKNA
Sbjct: 14 TPSNQNNYSNNNSRTPSYSLPAPVAQKKNA 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,776,596
Number of Sequences: 5004
Number of extensions: 30689
Number of successful extensions: 124
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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