Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313C03f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 124 3e-29
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 87 8e-18
04_01_0103 + 1082077-1082167,1083037-1085477 36 0.015
02_04_0017 + 18937774-18937864,18938505-18940945 36 0.015
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188... 33 0.18
01_06_0662 + 30987187-30987277,30987825-30990214 32 0.24
10_08_0965 + 21915842-21916906 30 0.98
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 30 0.98
05_03_0437 - 14012632-14012838 30 1.3
08_02_1130 + 24517319-24518149,24519374-24519868,24519954-245201... 29 3.0
05_03_0603 - 16117695-16118396,16118679-16118939,16120100-161201... 28 5.2
05_01_0197 - 1417672-1417899,1418921-1418974,1419267-1419552,142... 27 6.9
01_06_0236 - 27751430-27751600,27752029-27752278,27753131-27754050 27 6.9
07_03_0849 + 21997758-21998423 27 9.1
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 27 9.1
03_06_0383 + 33539498-33539695 27 9.1
02_02_0113 + 6914562-6915260 27 9.1
>03_05_0044 + 20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 124 bits (300), Expect = 3e-29
Identities = 66/137 (48%), Positives = 81/137 (59%)
Frame = -3
Query: 516 VSGVKFRLQDGAHHIVDSSELAFFLAAKGAVKDVFDVGAWQILEPVMFVEVTLPDEFHGT 337
V ++ L DGA H VDSSELAF LA+ A + + ILEPVM VE+ +P EF GT
Sbjct: 632 VENIRIVLTDGASHAVDSSELAFKLASIYAFRQCYAAARPVILEPVMKVELKVPTEFQGT 691
Query: 336 VVGQLNKRXXXXXXXXXXXGWTSIYAEVPLNNMFGYAGELRSMTQGKGEFSMEYSRYSPC 157
V G +NKR T + VPLNNMFGY+ LRSMTQGKGEFSMEY ++
Sbjct: 692 VTGDMNKRKGIIVGNDQEGDDTVVVCHVPLNNMFGYSTALRSMTQGKGEFSMEYLEHNTV 751
Query: 156 LPDVQEQLIRKHQEEMG 106
DVQ QL+ ++ G
Sbjct: 752 SQDVQMQLVNTYKASRG 768
>04_04_0640 - 26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 87.0 bits (206), Expect = 8e-18
Identities = 49/129 (37%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Frame = -3
Query: 495 LQDGAHHIVDSSELAFFLAAKGAVKDVFDVGAWQILEPVMFVEVTLPDEFHGTVVGQLNK 316
L DG++H VDSS LAF +AA+GA ++ ++LEP+M VEV P+E G V+G LN
Sbjct: 617 LVDGSYHDVDSSVLAFQIAARGAFREGLRKAGPRLLEPIMKVEVITPEEHLGDVIGDLNS 676
Query: 315 RXXXXXXXXXXXGWTSIY-AEVPLNNMFGYAGELRSMTQGKGEFSMEYSRYSPCLPDVQE 139
R G + A VPL MF Y LR MT+G+ ++M+ +++ +Q
Sbjct: 677 RRGQVNSFGDKPGGLKVVDAFVPLAEMFQYVSTLRGMTKGRASYTMQLAKFDVVPQHIQN 736
Query: 138 QLIRKHQEE 112
+L QEE
Sbjct: 737 ELSAAKQEE 745
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 36.3 bits (80), Expect = 0.015
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = -3
Query: 396 QILEPVMFVEVTLPDEFHGTVVGQLNKRXXXXXXXXXXXGWT--SIYAEVPLNNMFGYAG 223
++LEPV VE+ P+ G + G LN++ G +I A +P+ FG++
Sbjct: 724 RLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSS 783
Query: 222 ELRSMTQGK 196
+LR+ T G+
Sbjct: 784 QLRAATSGQ 792
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 36.3 bits (80), Expect = 0.015
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = -3
Query: 396 QILEPVMFVEVTLPDEFHGTVVGQLNKRXXXXXXXXXXXGWT--SIYAEVPLNNMFGYAG 223
++LEPV VE+ P+ G + G LN++ G +I A +P+ FG++
Sbjct: 724 RLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSS 783
Query: 222 ELRSMTQGK 196
+LR+ T G+
Sbjct: 784 QLRAATSGQ 792
>10_01_0167 +
1876793-1877402,1877423-1877642,1877760-1879534,
1880019-1880199,1881313-1881529
Length = 1000
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -2
Query: 196 RRVQYGVQPVLALSTGRAGATDQEAPRGNG 107
RR+QYG VLA ST +EAP+G G
Sbjct: 890 RRLQYGFNKVLASSTASNALRGKEAPKGGG 919
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 32.3 bits (70), Expect = 0.24
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -3
Query: 396 QILEPVMFVEVTLPDEFHGTVVGQLNKRXXXXXXXXXXXGWT--SIYAEVPLNNMFGYAG 223
++LEPV VE+ P+ G + LN++ G +I A +P+ FG+
Sbjct: 722 RLLEPVYLVEIQAPENALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFTS 781
Query: 222 ELRSMTQGK 196
LR+ T G+
Sbjct: 782 TLRAATSGQ 790
>10_08_0965 + 21915842-21916906
Length = 354
Score = 30.3 bits (65), Expect = 0.98
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -1
Query: 482 PTTLWTPASWHSSWQLRGPSRMFSTWERGRYLNRSCSLK*RCRTSSTARWW 330
PT ++ A W R SR S W GR+ +R + ++TA WW
Sbjct: 272 PTASFSSARSQERWSNRWSSRWSSRWSSGRWSSRYDA--GTVTAAATAEWW 320
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 30.3 bits (65), Expect = 0.98
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = -3
Query: 438 AKGAVKDVFDVGAWQILEPVMFVEVTLPDEFHGTVVGQLNKRXXXXXXXXXXXGWTSIY- 262
A+ V F + +++EPV ++E+ P + + L++R G T IY
Sbjct: 836 ARRVVYSAFLMANPRLMEPVYYIEIQTPIDCVSAIYTVLSRRRGHVTADVPKPG-TPIYV 894
Query: 261 --AEVPLNNMFGYAGELRSMTQGK 196
A +P+ FG+ +LR TQG+
Sbjct: 895 VKAFLPVIESFGFETDLRYHTQGQ 918
>05_03_0437 - 14012632-14012838
Length = 68
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 190 VQYGVQPVLALSTGRAGATDQEAPRGNGAATRPEEKEKL 74
V GV +A +TG A T P+G+G P E KL
Sbjct: 19 VMTGVARSIATTTGEAATTTMRLPQGHGQRFWPREGRKL 57
>08_02_1130 +
24517319-24518149,24519374-24519868,24519954-24520179,
24520267-24520291,24520925-24521234,24521328-24521888
Length = 815
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +1
Query: 331 HHRAVELVRQRYFNEHDRFKYLPRSHVENILDGPLSCQEECQLAGVHNVVGSVLKPE 501
H + +R+ +E D ++ + ++ DG + E C L GV + GS+ KP+
Sbjct: 30 HDPKITQEEKRWEDEDDEYEEEEEELLYDVDDGEDAPAEACVLTGVKHSDGSIYKPK 86
>05_03_0603 -
16117695-16118396,16118679-16118939,16120100-16120144,
16120362-16120453,16120568-16120706,16121027-16121063,
16121147-16121434,16122000-16122074,16122505-16122581,
16123092-16123256,16123387-16123543,16124558-16124733,
16124828-16124940,16125398-16125428,16126487-16126605,
16126696-16126789,16127384-16127458,16127548-16127666,
16127751-16127907,16129252-16129398
Length = 1022
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 461 LESTMWWAPS*SLNFTPETL 520
L++ WW P+ S+NF ETL
Sbjct: 640 LQARPWWTPTTSVNFLSETL 659
>05_01_0197 -
1417672-1417899,1418921-1418974,1419267-1419552,
1421768-1422291
Length = 363
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 443 WQLRGPSRMFSTWERGR 393
W R PSR+ S W RGR
Sbjct: 140 WLWRRPSRLLSKWRRGR 156
>01_06_0236 - 27751430-27751600,27752029-27752278,27753131-27754050
Length = 446
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 518 RSPV*SSGFRTEPTTLWTPASWHS 447
R P+ SGF T LW P W+S
Sbjct: 350 RFPIGFSGFAFNSTILWDPQRWNS 373
>07_03_0849 + 21997758-21998423
Length = 221
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 332 TTVPWNSSGNVTSTNMTGSSICHAPTSKTSLTAPLAAKKNASSLESTM 475
++VPW+S+ ++ + SS +S T+ TAP + ++ SSL +
Sbjct: 76 SSVPWSSTSALSLDSARSSS----SSSSTTTTAPCSRSRSLSSLSDAL 119
>04_01_0084 -
912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 498 RLQDGAHHIVDSSELAFFLAAKGAVKDVFDVGAWQILE 385
RL DG H I ++ A + G ++ V + AW+I +
Sbjct: 288 RLLDGNHGIDWATHAANYWVCSGIIRSVGNTSAWEIAQ 325
>03_06_0383 + 33539498-33539695
Length = 65
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -3
Query: 456 LAFFLAAKGAVKDVFDVGAWQILEPVMFVEVTLPDEFH-GTVVGQLN 319
LA + AV V D W IL V + + + FH G +G+L+
Sbjct: 15 LAMAATSSAAVYKVGDTSGWTILGNVNYTDWAVKKTFHVGDTIGKLS 61
>02_02_0113 + 6914562-6915260
Length = 232
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 344 WNSSGNVTSTNMTGSSICHAPTSKTSLTAPLAAKKNAS 457
W SS S N+ G + A T++ P+ AKK S
Sbjct: 139 WASSAGRRSVNLRGYTPSFAALDDTAVAPPIPAKKQVS 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,724,969
Number of Sequences: 37544
Number of extensions: 232555
Number of successful extensions: 856
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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