Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313C03f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)                 81   5e-16
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    36   0.020
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.58 
SB_6340| Best HMM Match : EMI (HMM E-Value=0.00055)                    30   1.0  
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)                  30   1.3  
SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)                    30   1.3  
SB_12270| Best HMM Match : Big_2 (HMM E-Value=8.1)                     29   2.3  
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)                29   3.1  
SB_26786| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)               28   5.4  
SB_50451| Best HMM Match : Avirulence (HMM E-Value=0.14)               27   7.1  
SB_45657| Best HMM Match : NADH_dehy_S2_C (HMM E-Value=6.4)            27   9.4  
SB_41690| Best HMM Match : DSL (HMM E-Value=0)                         27   9.4  
SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)                27   9.4  
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082)               27   9.4  
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.4  
SB_52455| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)          27   9.4  

>SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)
          Length = 238

 Score = 81.0 bits (191), Expect = 5e-16
 Identities = 39/77 (50%), Positives = 51/77 (66%)
 Frame = -3

Query: 342 GTVVGQLNKRXXXXXXXXXXXGWTSIYAEVPLNNMFGYAGELRSMTQGKGEFSMEYSRYS 163
           GTV+  +N+R           G+ +++AEVPLN+MFGYA ELRS TQGKGEF+MEY RY 
Sbjct: 155 GTVIAGVNRRHGQVTGTDANEGYFTLFAEVPLNDMFGYATELRSQTQGKGEFTMEYCRYL 214

Query: 162 PCLPDVQEQLIRKHQEE 112
           P L  VQ +L+ +   E
Sbjct: 215 PALAQVQAELMDRFNVE 231


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -3

Query: 393 ILEPVMFVEVTLPDEFHGTVVGQLNKRXXXXXXXXXXXGWTS--IYAEVPLNNMFGYAGE 220
           +LEPV  VE+  P+   G + G LN+R           G     + A +P+   FG+  +
Sbjct: 715 LLEPVYSVEIQCPESAVGGIYGVLNRRRGQVLEESNVAGTPMFIVKAYLPVMESFGFTAD 774

Query: 219 LRSMTQGK 196
           LRS T G+
Sbjct: 775 LRSKTGGQ 782


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
 Frame = -3

Query: 516 VSGVKFRLQDG--AHHIVDSSELAFFLAAKGAVKDVFDVGAWQILEPVMFVEVTLPDEFH 343
           +  VKF++ D   A   +          A+      F +   +++EP  FVEV  P +  
Sbjct: 652 IRNVKFKILDAVIAGEPIHRGGGQIIPTARRVAYSAFLMATPRLMEPYFFVEVQAPADCV 711

Query: 342 GTVVGQLNKRXXXXXXXXXXXGWT--SIYAEVPLNNMFGYAGELRSMTQGK 196
            +V   L +R           G    +I A +P  + FG+  +LR+ TQG+
Sbjct: 712 SSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQ 762


>SB_6340| Best HMM Match : EMI (HMM E-Value=0.00055)
          Length = 591

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -2

Query: 508 CEVQASGRSPPHCGLQRAGILLGS*GGRQGCFRRGSVA 395
           CEV    R+P HC ++RA  L      RQG ++ GS+A
Sbjct: 252 CEVSLPQRAPHHCRIKRAQGLT----ARQGLYKLGSLA 285


>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
          Length = 119

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -3

Query: 396 QILEPVMFVEVTLPDEFHGTVVGQLNKRXXXXXXXXXXXGWT--SIYAEVPLNNMFGYAG 223
           +++EP  FVEV  P +   +V   L +R           G    +I A +P  + FG+  
Sbjct: 4   RLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFET 63

Query: 222 ELRSMTQGK 196
           +LR+ TQG+
Sbjct: 64  DLRTHTQGQ 72


>SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)
          Length = 1328

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 367 FNEHDRFKYLPRSHVENILDGPLSCQEECQLAGVHNVVGSVLKPELHTGDL 519
           F EH+ F+      + +IL      Q+E  L G H V+ +VLK    +G++
Sbjct: 182 FEEHEEFQLPALQLLNDILLEDSPAQDEFVLQGFHAVILNVLKSHKDSGEI 232


>SB_12270| Best HMM Match : Big_2 (HMM E-Value=8.1)
          Length = 112

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +2

Query: 329 PTTVPWNSSGNVTSTNMTGSSICHAPTSKTSLTAPLAAKKNASSLE 466
           P  VP+N +GN TS N TG       T +  +T   A + NAS+ E
Sbjct: 3   PIYVPFNITGNQTSWNWTGPL-----TGRNPVTLTPAPQSNASTTE 43


>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
          Length = 796

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 329 PTTVPWNSSGNVTSTNMTGSSICHAPTSK 415
           PTT   N SG    TNMT SS  H+ T +
Sbjct: 224 PTTSRQNVSGQAGPTNMTQSSTSHSSTPR 252


>SB_26786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = -2

Query: 235 RIRRRTEV--NDSR*RRVQYGVQ--PVLALSTGRAGATDQEAPRGNGAATRPEEKEKLTP 68
           R RRR E   ND R  R  Y  +  P + L +GR   TD+   RG+  ++  EE++K  P
Sbjct: 33  RRRRRMERDDNDVRETRRNYRTEDRPDVNLDSGRQKRTDKRQRRGSN-SSEDEERQKRIP 91


>SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)
          Length = 1890

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +2

Query: 347  NSSGNVTSTNMTGSSICHAPTSKTSLTAPLAAKKNASSLESTM 475
            NS GN+   N+T +++     S+++ ++PL+ KK      S++
Sbjct: 1070 NSGGNLAVGNVTSAAVHMTRESRSATSSPLSPKKTKLHKSSSL 1112


>SB_50451| Best HMM Match : Avirulence (HMM E-Value=0.14)
          Length = 1085

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
 Frame = +2

Query: 332 TTVPWNSSGNVTSTNMTGSSICHAPTSKTSLTAPLAAKKN-ASSLESTMWWAPS*SLNFT 508
           TTVPWN++ N          +   P + T+ TAP     N    LE      PS     T
Sbjct: 490 TTVPWNNNNNYYRPLEQQQQLLPPPGTTTTTTAPWNNNNNHYRPLEQQQLLLPSPGTTTT 549

Query: 509 PETL 520
             T+
Sbjct: 550 TTTV 553


>SB_45657| Best HMM Match : NADH_dehy_S2_C (HMM E-Value=6.4)
          Length = 142

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 332 TTVPWNSSGNVTSTNMTGSSICHAPTSKTSLTA 430
           TT P+ SS + +S++ + SS   + +S +SLT+
Sbjct: 106 TTTPYTSSSSSSSSSSSSSSSSSSSSSSSSLTS 138


>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
          Length = 2798

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +2

Query: 326 CPT-TVPWN-SSGNVTSTNMTGSSICHA 403
           C T  +P N SSG+ T    TG  ICHA
Sbjct: 550 CDTYCIPTNDSSGHYTCNTTTGEKICHA 577


>SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)
          Length = 411

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = -3

Query: 225 GELRSMTQGKGEFSMEYSRYSPCLPDVQEQLIRKHQEEMGLLPDQKKKKN*RPSKNV 55
           G++    + KG +S  Y+ + P    +  +L++ +QE + L   + K+K  +PS  V
Sbjct: 38  GKVWYFIKWKG-YSQRYNTWEPEENVLDPRLLKAYQERLALSEKKVKRKKVKPSTEV 93


>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6119

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/27 (55%), Positives = 15/27 (55%)
 Frame = -2

Query: 142  GATDQEAPRGNGAATRPEEKEKLTPVE 62
            G T   A      ATRPE KEKLT VE
Sbjct: 2336 GRTSTSAHLNIIVATRPEFKEKLTKVE 2362


>SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082)
          Length = 478

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 319 VQLPHHRAVELVRQRYFNEHDRFKYLPRSHVENILD 426
           +Q  H +AVE V ++Y +E    +    +HVE IL+
Sbjct: 245 LQAAHGKAVEAVHEQYRDEIVELESKHSAHVEEILE 280


>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 353  SGNVTSTNMTGSSICHAPTSKTSLTAPLAAKKNASSLESTMWWAP 487
            +G+V ST   GS    APT   +LTAP  +    + + S    AP
Sbjct: 2054 TGSVPSTTPIGSVPVTAPTGSVALTAPNGSVALTTPIGSVPLTAP 2098


>SB_52455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = -2

Query: 229 RRRTEVNDSR*RRVQYGVQPVLALSTGRAGATDQEAPRGNGAATRPEEKEKLTPVEK 59
           RRR E  D R R++    + +L   +GRAG+ ++   + +    +P ++E+  P ++
Sbjct: 50  RRRPERRDERPRKLDDKPRELLDRDSGRAGSGEKREDK-HRRLEKPAQRERNDPRDR 105


>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
          Length = 593

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 380 TGSSICHAPTSKTSLTAPLAAKKNASSLEST 472
           T +S+  APTSKTSLT  L     A  +  T
Sbjct: 185 TATSMVTAPTSKTSLTTTLRPALTAKHINIT 215


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,148,454
Number of Sequences: 59808
Number of extensions: 246045
Number of successful extensions: 905
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)