Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313C03f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 129 1e-30
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 40 0.001
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 40 0.001
AF077540-3|AAC26312.2| 421|Caenorhabditis elegans C-type lectin... 29 1.5
AL132943-5|CAB81977.1| 367|Caenorhabditis elegans Hypothetical ... 29 2.0
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 29 2.7
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 29 2.7
Z69658-2|CAB60997.1| 389|Caenorhabditis elegans Hypothetical pr... 28 3.5
U59213-1|AAB09672.1| 363|Caenorhabditis elegans transmembrane p... 28 3.5
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 28 4.7
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 28 4.7
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 28 4.7
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical pr... 27 6.2
AC006832-4|AAF39996.1| 485|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical protein
F29C12.4 protein.
Length = 750
Score = 129 bits (311), Expect = 1e-30
Identities = 60/148 (40%), Positives = 95/148 (64%), Gaps = 1/148 (0%)
Frame = -3
Query: 519 KVSGVKFRLQDGAHHIVDSSELAFFLAAKGAVKDVFDVGAWQILEPVMFVEVTLPDEFHG 340
+++G+ R+QDG+ H VDS+E+A + +++ F+ W +LEP+M VE T+P EF G
Sbjct: 600 RIAGIHVRIQDGSTHAVDSTEIAMINTMQNMMRESFEKANWLLLEPIMKVEATVPTEFQG 659
Query: 339 TVVGQLNKRXXXXXXXXXXXGWTSIYAEVPLNNMFGYAGELRSMTQGKGEFSMEYSRYSP 160
VV L +R G+ ++ E PL++MFGY ELRS+T+GKGEFSMEYSRY+P
Sbjct: 660 NVVTSLTQRNALITTTDSTEGYATVICEAPLSDMFGYTSELRSLTEGKGEFSMEYSRYAP 719
Query: 159 CLPDVQEQLIRKHQEEMGLL-PDQKKKK 79
+ Q+++ + ++ G+ P++K KK
Sbjct: 720 TTLEAQDRVQAEWRQLHGIADPNEKGKK 747
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = -3
Query: 396 QILEPVMFVEVTLPDEFHGTVVGQLNKRXXXXXXXXXXXGWTS--IYAEVPLNNMFGYAG 223
++LEPV VE+ P+ G + G LN+R G + A +P+N FG+
Sbjct: 733 RLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTA 792
Query: 222 ELRSMTQGK 196
+LRS T G+
Sbjct: 793 DLRSNTGGQ 801
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = -3
Query: 396 QILEPVMFVEVTLPDEFHGTVVGQLNKRXXXXXXXXXXXGWTS--IYAEVPLNNMFGYAG 223
++LEPV VE+ P+ G + G LN+R G + A +P+N FG+
Sbjct: 733 RLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTA 792
Query: 222 ELRSMTQGK 196
+LRS T G+
Sbjct: 793 DLRSNTGGQ 801
>AF077540-3|AAC26312.2| 421|Caenorhabditis elegans C-type lectin
protein 21 protein.
Length = 421
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 370 NEHDRFKYLPRSHVENILDGPLSCQEEC-QLAGVHN 474
N ++ + Y+P S ++ + SC+EEC L +H+
Sbjct: 163 NNYNGYCYIPHSEAKSFENAQKSCEEECGNLVSIHS 198
>AL132943-5|CAB81977.1| 367|Caenorhabditis elegans Hypothetical
protein Y116F11B.8 protein.
Length = 367
Score = 29.1 bits (62), Expect = 2.0
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +2
Query: 329 PTTVPWNSSG--NVTSTNMTGSSICHAPTSKTSLTAPLAAKKNASSLESTMWWAPS*SLN 502
P +PWNS G + +T+ T +S+ PT+ +S AP A + ++ ST PS S++
Sbjct: 246 PVVIPWNSPGTSSKATTSATVTSLVLGPTTFSS--APQALDSSLAADPST---DPSPSIS 300
Query: 503 FTPET 517
T T
Sbjct: 301 STDPT 305
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 28.7 bits (61), Expect = 2.7
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = -3
Query: 438 AKGAVKDVFDVGAWQILEPVMFVEVTLPDEFHGTVVGQLNKRXXXXXXXXXXXG--WTSI 265
A+ F + +++EP VEV P + V L KR G +I
Sbjct: 816 ARRCAYSAFLMATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTI 875
Query: 264 YAEVPLNNMFGYAGELRSMTQGK 196
A +P+ + FG+ +LR TQG+
Sbjct: 876 SAYIPVMDSFGFETDLRIHTQGQ 898
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 28.7 bits (61), Expect = 2.7
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = -3
Query: 438 AKGAVKDVFDVGAWQILEPVMFVEVTLPDEFHGTVVGQLNKRXXXXXXXXXXXG--WTSI 265
A+ F + +++EP VEV P + V L KR G +I
Sbjct: 691 ARRCAYSAFLMATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTI 750
Query: 264 YAEVPLNNMFGYAGELRSMTQGK 196
A +P+ + FG+ +LR TQG+
Sbjct: 751 SAYIPVMDSFGFETDLRIHTQGQ 773
>Z69658-2|CAB60997.1| 389|Caenorhabditis elegans Hypothetical
protein C36H8.2 protein.
Length = 389
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 503 SSGFRTEPTTLWTPASWHSSW 441
SS F +P T WTPA +++ W
Sbjct: 48 SSHFIGDPITCWTPAQFNAQW 68
>U59213-1|AAB09672.1| 363|Caenorhabditis elegans transmembrane
protein protein.
Length = 363
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 503 SSGFRTEPTTLWTPASWHSSW 441
SS F +P T WTPA +++ W
Sbjct: 22 SSHFIGDPITCWTPAQFNAQW 42
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 332 TTVPWNSSGNVTSTNMTGSSICHAPTSKTSLTAPL 436
TT P T T TG ++ APT+ S T P+
Sbjct: 2045 TTTPSTPGAGTTGTPGTGPTVTAAPTNGISTTQPI 2079
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 332 TTVPWNSSGNVTSTNMTGSSICHAPTSKTSLTAPL 436
TT P T T TG ++ APT+ S T P+
Sbjct: 2045 TTTPSTPGAGTTGTPGTGPTVTAAPTNGISTTQPI 2079
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 329 PTTVPWNSSGNVTSTNMTGSSICHAPTSKTSLTAPLAAKKNASS 460
PTT + T+T T +I +PT+ +LT P A N +S
Sbjct: 494 PTTTNTPPANPTTATPTTVGTIGTSPTAPANLTTPTTAPVNPTS 537
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 332 TTVPWNSSGNVTSTNMTGSSICHAPTSKTSLTAPL 436
TT P T T TG ++ APT+ S T P+
Sbjct: 2045 TTTPSTPGAGTTGTPGTGPTVTAAPTNGISTTQPI 2079
>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical protein
W02B8.2 protein.
Length = 1256
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3
Query: 516 VSGVKFRLQDGAHHIVDSSELAFFLAAKGAVKDVFDVGAWQIL-EPVMFVEVT 361
V +++ QDG ++ S + + + +DVF A ++ EPV F+E T
Sbjct: 1035 VHTIRYHQQDGQRFLLVSDDTQLHIRKYNSTRDVFAHFAKLVVPEPVSFIEST 1087
>Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical
protein F58A4.1 protein.
Length = 254
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 323 SCPTTVPWNSSGNVTSTNMTGSSICHAPTSKTSLTAPLAAKKNASSLEST 472
S P+T S+ TST+ + S+ PT+++S T + +SS +T
Sbjct: 95 SSPSTSTSTSTSTSTSTSTSRSTSTVTPTTRSSTTTTATSTPTSSSKATT 144
>AC006832-4|AAF39996.1| 485|Caenorhabditis elegans Hypothetical
protein ZK355.4 protein.
Length = 485
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -3
Query: 483 AHHIVDSSEL-AFFLAAKGAVKDVFDV 406
A H+ D+ +L A L A+GAV D+FD+
Sbjct: 158 AFHVTDNPKLDATHLCAQGAVADMFDM 184
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,138,846
Number of Sequences: 27780
Number of extensions: 179171
Number of successful extensions: 629
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -