Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313C02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.32
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.42
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 0.97
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 3.9
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 3.9
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 5.2
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 5.2
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 25 5.2
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 25 6.8
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 25 9.0
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 25 9.0
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 25 9.0
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 25 9.0
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.32
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 474 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 373
DLE N +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.1 bits (62), Expect = 0.42
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 118 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 261
ET K S K +K + + +++++ K NT++ A Q W+K KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 85 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 201
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 322 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 414
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -1
Query: 221 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 42
M F ++ T + +PF R+ HL S +T+ +Y+ + T ++++
Sbjct: 1 MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57
Query: 41 EASAHTARTKA 9
+A A T A
Sbjct: 58 NGAAKEAATAA 68
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +1
Query: 304 TEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST 483
+ T K +N+++H+ L L ++ FG S D +S ++ + +N YF ++ +
Sbjct: 146 SSDTNKKVNRKEHNELSLSHLSFNDTSDFG-SSDLSSSEIE---STENDNKAPYFSLLYS 201
Query: 484 EDKQYLK 504
+ ++K
Sbjct: 202 DGFDFIK 208
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -3
Query: 372 VLLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 256
V+L+ + G + + L LL +D +++ +V FDDF+
Sbjct: 1284 VVLLQDIHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 399 QRQNQQESLLEVYPRVGKQQSLLQDHVHRGQTVPEAR 509
+RQN Q+ L EV V + QSL+ + + V E R
Sbjct: 148 ERQNHQQQLEEVLATVDQLQSLVTNFNDQQDEVDELR 184
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 179 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSV 63
SL+ S FFS YSE + + + IYS S S S+
Sbjct: 6 SLLWSIFFSIVYSEKTLLNFKHYELCNGIYSKSESGGSL 44
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 142 EYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQ 237
+Y KE + EV+ + L ENGK N AY+
Sbjct: 923 KYDKEAQKEVLIIFAQYLRENGKSNEAAIAYE 954
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +1
Query: 391 GDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKL 507
G ++ +S SW F P N R+Y +Q+ +L
Sbjct: 69 GGEREGSSLTHSWTFQPGKHNQRLYSDNFQEAQRQWKRL 107
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 24.6 bits (51), Expect = 9.0
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +1
Query: 265 VKSYFPIQFRVIFTEQTVKLINKRDHHALKL----IDQQNH-NKIAFGDSKDKTSKKVSW 429
+K Y P + + VK IN+ D LKL + N + I+FG KD SK +S
Sbjct: 139 IKKYSPTSLEL----EQVKEINRLDGLLLKLQLGDVPSVNWLDDISFGKIKDFRSKHMSL 194
Query: 430 KFTPVLENNRVYFKIMSTEDKQY 498
P+L + + F + Y
Sbjct: 195 VTIPILYLDFLQFSFPVVFQRSY 217
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -3
Query: 501 QVLFVLGGHDLEVNSVVFQHGGK 433
+V +V GH+ ++ S+ F H G+
Sbjct: 393 KVRYVFSGHEQDIYSLDFSHNGR 415
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.131 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,182
Number of Sequences: 5004
Number of extensions: 47191
Number of successful extensions: 207
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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