Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313C02f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05170.1 68415.m00544 vacuolar protein sorting 11 family prot...    31   0.47 
At1g62250.2 68414.m07023 expressed protein                             30   0.82 
At1g62250.1 68414.m07022 expressed protein                             30   0.82 
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   1.9  
At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (AT...    29   2.5  
At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A...    29   2.5  
At1g47310.1 68414.m05238 expressed protein                             28   3.3  
At3g62000.1 68416.m06963 O-methyltransferase family 3 protein se...    28   4.4  
At3g04160.1 68416.m00440 expressed protein ; expression supporte...    28   4.4  
At2g25290.1 68415.m03025 octicosapeptide/Phox/Bem1p (PB1) domain...    28   4.4  
At4g32070.1 68417.m04564 octicosapeptide/Phox/Bem1p (PB1) domain...    27   5.8  
At1g56660.1 68414.m06516 expressed protein                             27   5.8  
At5g06800.1 68418.m00768 myb family transcription factor contain...    27   7.7  
At3g47730.1 68416.m05200 ABC transporter family protein AbcA, Di...    27   7.7  

>At2g05170.1 68415.m00544 vacuolar protein sorting 11 family protein
           / VPS11 family protein similar to Vacuolar protein
           sorting 11 (hVPS11) (PP3476) (Swiss-Prot:Q9H270) [Homo
           sapiens]; similar to Vacuolar biogenesis protein END1
           (PEP5 protein) (Vacuolar protein sorting 11)
           (Swiss-Prot:P12868) [Saccharomyces cerevisiae]
          Length = 932

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = +1

Query: 106 IGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDG--KEIVKSYF 279
           +G Y+ A+   S     + G  I++  K LIE+  + T+D   +L T+ G    +  S  
Sbjct: 498 LGNYDEALQYVSSLEPSQAGVTIEQYGKILIEHKPKETIDILMRLCTEQGIPNGVFLSML 557

Query: 280 --PIQFRVIFTEQTVKLINKRDHHA 348
             P+ F  +F +    L++  + +A
Sbjct: 558 PSPVDFITVFVQHPHSLMHFLERYA 582


>At1g62250.2 68414.m07023 expressed protein
          Length = 223

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 2   LCLPSSSPCVRWLLTPHLHQELMTYWRSSCI*VSSLVNTRPLS 130
           LC P  +  +RW  TP +  E+++ WR  C  +++    R ++
Sbjct: 181 LCTPQPT-VIRWSSTPSVSDEILSKWRGFCAVIANAYYIRGMA 222


>At1g62250.1 68414.m07022 expressed protein
          Length = 267

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 2   LCLPSSSPCVRWLLTPHLHQELMTYWRSSCI*VSSLVNTRPLS 130
           LC P  +  +RW  TP +  E+++ WR  C  +++    R ++
Sbjct: 181 LCTPQPT-VIRWSSTPSVSDEILSKWRGFCAVIANAYYIRGMA 222


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 265 VKSYFPIQFRVIFTEQTVKLINKR-DHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTP 441
           V S + +QF V  +   +  IN R D HAL ++ + + +K+ F D    +    +  F P
Sbjct: 76  VPSVYELQFAVPMSGAVLNNINPRLDAHALSVLLRHSESKLVFVDHHSSSLVLEAVSFLP 135

Query: 442 VLENNRV 462
             E  R+
Sbjct: 136 KDERPRL 142


>At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase
           (ATHIM) identical to SP|P34881 DNA
           (cytosine-5)-methyltransferase AthI (EC 2.1.1.37)
           {Arabidopsis thaliana}
          Length = 1534

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 250 PLSITGRRSPWCSSCRFRSDASR 182
           PLS  GR S +C+SC+ R D  +
Sbjct: 869 PLSDIGRSSGFCTSCKIREDEEK 891


>At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A19)
           Identical to Cytochrome P450 (SP:Q9T0K0) [Arabidopsis
           thaliana]; similar to cytochrome P450LXXIA1, Persea
           americana, M32885
          Length = 490

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 348 GVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 256
           G  +P +  +D + G+DH   + + RFD+FL
Sbjct: 221 GEYIPSLSWIDKIRGQDHKMEEVDKRFDEFL 251


>At1g47310.1 68414.m05238 expressed protein
          Length = 395

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 19/67 (28%), Positives = 35/67 (52%)
 Frame = +1

Query: 304 TEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST 483
           T QTV  +  +   A  ++  Q   + + G ++   SKKV+W+  P +E  RV+F++ + 
Sbjct: 286 TRQTVSSVTAK-LKASGMVRFQLEIERSIGKNESVISKKVAWRTKPKIE--RVWFEVTAK 342

Query: 484 EDKQYLK 504
            +   LK
Sbjct: 343 IEGDKLK 349


>At3g62000.1 68416.m06963 O-methyltransferase family 3 protein
           several O-methyltransferases - different species;
           contains Pfam 01596 O-methyltransferase domain
          Length = 278

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
 Frame = +1

Query: 73  VLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKD 252
           V  E+   S+ + +    +A  S  +  K+G +  E++K +I+NG+  + DFA+      
Sbjct: 147 VACERDSNSLEVAKRYYELAGVSHKVNVKQG-LAAESLKSMIQNGEGASYDFAF---VDA 202

Query: 253 GKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALK--LIDQQNHNKIAFGDSKDKTSKKVS 426
            K + + YF +  +++     + + N   H  +   +++      I   + K    K+VS
Sbjct: 203 DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVSDPMVNDAKTISIRNFNKKLMDDKRVS 262

Query: 427 WKFTPV 444
               P+
Sbjct: 263 ISMVPI 268


>At3g04160.1 68416.m00440 expressed protein ; expression supported
           by MPSS
          Length = 712

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 180 SREASDRKRQEEHHGLRLPVMDKGWKGNRQILLPHPV 290
           SR      ++E   G  +P  DK WKG  +  + +P+
Sbjct: 563 SRSPIGNDQKESDFGYSIPSTDKQWKGENRADIEYPI 599


>At2g25290.1 68415.m03025 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein / tetratricopeptide repeat
           (TPR)-containing protein low similarity to SP|Q99614
           Tetratricopeptide repeat protein 1 {Homo sapiens};
           contains Pfam profiles PF00564: PB1 domain, PF00515: TPR
           Domain
          Length = 697

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 91  YMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQ 237
           YM + +GEY  AI +C+  L E      K  +KR       N +DFA++
Sbjct: 100 YMQMGLGEYPNAINECNLAL-EASPRFSKALLKRARCYEALNKLDFAFR 147


>At4g32070.1 68417.m04564 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein / tetratricopeptide repeat
           (TPR)-containing protein similar to SP|Q99614
           Tetratricopeptide repeat protein 1 {Homo sapiens};
           contains Pfam profiles PF00564: PB1 domain, PF00515: TPR
           Domain
          Length = 811

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 91  YMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQ 237
           YM + +GEY  AI++C+  L E      K  V+R       N +D+A++
Sbjct: 99  YMQMGLGEYPNAISECNLAL-EASPRYSKALVRRSRCYEALNKLDYAFR 146


>At1g56660.1 68414.m06516 expressed protein
          Length = 522

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/74 (21%), Positives = 34/74 (45%)
 Frame = +3

Query: 150 EGKEGRGYQGSREASDRKRQEEHHGLRLPVMDKGWKGNRQILLPHPV*SDLHRADCQAHK 329
           +GK+ +G +G  E  D ++++EH      + +K  K N++         +  +   +  K
Sbjct: 213 KGKKEKGEKGDLEKEDEEKKKEHDETDQEMKEKDSKKNKKKEKDESCAEEKKKKPDKEKK 272

Query: 330 QKGPSRPQVDRPTK 371
           +K  S  + D+  K
Sbjct: 273 EKDESTEKEDKKLK 286


>At5g06800.1 68418.m00768 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 375

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 399 QRQNQQESLLEVYPRVGKQQSLLQDHVH 482
           Q+Q  +ESLL+  P      SLL  H+H
Sbjct: 319 QQQKNKESLLKKLPDAEASLSLLDPHIH 346


>At3g47730.1 68416.m05200 ABC transporter family protein AbcA,
           Dictyostelium discoideum, DDU66526
          Length = 983

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 349 LKLIDQQNHNKIAFGDSKDKTSK--KVSWKFTPVLENNRVYFKIMSTEDKQYL 501
           +  ++  NHN  A  DS++   K  K   K  P+ E N+ +   +   DK+ L
Sbjct: 762 ISFVESNNHNGEAGSDSREPVKKFFKDHLKVKPI-EENKAFMTFVIPHDKENL 813


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.131    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,072,188
Number of Sequences: 28952
Number of extensions: 258723
Number of successful extensions: 1007
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)