Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313C01f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 123 1e-29
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 75 6e-15
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 74 1e-14
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 64 2e-11
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 54 2e-08
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 53 2e-08
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 52 5e-08
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 51 1e-07
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 47 2e-06
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 47 2e-06
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 43 3e-05
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 33 0.034
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 27 1.3
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 26 3.0
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 25 5.2
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 25 5.2
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 9.0
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.0
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 123 bits (297), Expect = 1e-29
Identities = 56/66 (84%), Positives = 59/66 (89%)
Frame = +1
Query: 1 GSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREW 180
GSICLDILR QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTDR +Y AREW
Sbjct: 82 GSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREW 141
Query: 181 TRKYAM 198
TRKYA+
Sbjct: 142 TRKYAI 147
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 74.9 bits (176), Expect = 6e-15
Identities = 35/66 (53%), Positives = 46/66 (69%)
Frame = +1
Query: 1 GSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREW 180
G ICL L+ WSPAL I VLLSI +L+ PNPDDPL ++A+I+K + + AREW
Sbjct: 83 GRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREW 142
Query: 181 TRKYAM 198
T+KYA+
Sbjct: 143 TKKYAV 148
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 73.7 bits (173), Expect = 1e-14
Identities = 30/65 (46%), Positives = 44/65 (67%)
Frame = +1
Query: 1 GSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREW 180
G+ICLDIL+ QWSP T+ L+S+ SLLC P P +P ++A++Y + +++ AREW
Sbjct: 86 GAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREW 145
Query: 181 TRKYA 195
T YA
Sbjct: 146 TSSYA 150
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 63.7 bits (148), Expect = 2e-11
Identities = 28/66 (42%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +1
Query: 1 GSICLDILRAQ-WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELARE 177
G++CL IL+ Q + P++ + VL I LL +PNPDDPLV IA Y+ DR ++++AR+
Sbjct: 88 GNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARD 147
Query: 178 WTRKYA 195
+ ++A
Sbjct: 148 YVEQFA 153
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 53.6 bits (123), Expect = 2e-08
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +1
Query: 1 GSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKT-DREKYNELARE 177
G +C+DIL+ WSPA ++ L+I SLL + + PL + A++ +T D+ YN L R
Sbjct: 87 GEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRC 146
Query: 178 WTRKYA 195
T YA
Sbjct: 147 TTYLYA 152
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 53.2 bits (122), Expect = 2e-08
Identities = 23/59 (38%), Positives = 38/59 (64%)
Frame = +1
Query: 1 GSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELARE 177
G +CLDIL+ +WSP ++ +L SI SLL DPN P E A++++ ++++Y R+
Sbjct: 85 GELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKKEYVRRVRK 143
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 52.0 bits (119), Expect = 5e-08
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Frame = +1
Query: 1 GSICLDILRAQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAR 174
G++CL IL + W PA+TI ++LL I LL DPN P E ++K D+ +Y + R
Sbjct: 90 GTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVR 149
Query: 175 EWTRKYA 195
R+ A
Sbjct: 150 AQARENA 156
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 50.8 bits (116), Expect = 1e-07
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = +1
Query: 1 GSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNEL 168
G+ICLDIL+ +WS + +LLS+ SLL +PN PL + A ++ D +Y L
Sbjct: 110 GNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKRL 165
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 46.8 bits (106), Expect = 2e-06
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +1
Query: 1 GSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAR 174
G++CL+ILR W+P L ++ +L+ + L PN +DPL E A D + + R
Sbjct: 102 GNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVR 159
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 46.8 bits (106), Expect = 2e-06
Identities = 18/53 (33%), Positives = 33/53 (62%)
Frame = +1
Query: 31 QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRK 189
+WSP ++ K+LLS+ S+L +PN + + ++++ DRE+Y + R RK
Sbjct: 110 RWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARK 162
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 42.7 bits (96), Expect = 3e-05
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 1 GSICLDILRAQWSPALTISKVL-LSICSLLCDPNPDDPLVPEIARIYKTDREKYNELARE 177
GS+CLD++ WSP + + + + LL PN DPL E A + + Y R+
Sbjct: 82 GSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYAKVRD 141
Query: 178 WTRKYA 195
+ +YA
Sbjct: 142 YIARYA 147
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 32.7 bits (71), Expect = 0.034
Identities = 12/53 (22%), Positives = 29/53 (54%)
Frame = +1
Query: 31 QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRK 189
+W P + +L+S+ S+L PN + P + A+ ++ + +++ + R R+
Sbjct: 110 RWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVRR 162
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +1
Query: 40 PALTISKVLLSICSLLCDPNPDD---PLVPEIARIYKTD 147
PA++I LL++ + NP D P+V +I RI+K+D
Sbjct: 344 PAVSIDGTLLNVGDWVLIRNPADSSKPIVSQIYRIWKSD 382
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 34 WSPALTISKVLLSICSLLCDPNPDDPLVPEI 126
+SPA I KVL + L DPN + P++P+I
Sbjct: 291 FSPAPFIQKVLSRL--LPSDPNVEMPMIPQI 319
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 25.4 bits (53), Expect = 5.2
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 15/99 (15%)
Frame = +1
Query: 16 DILRAQWS-----PALTISKVLLSICSLLCDPN-PD-DPLVPEIARIYK--TDRE--KYN 162
DI + W+ PA ++ + + + CD N PD P+V ++RI D E K N
Sbjct: 35 DITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGETGKVN 94
Query: 163 ----ELAREWTRKYAM**VNCDINKTYTHTSPQPGLYPP 267
+ R W R+Y+M V D+ K +S + PP
Sbjct: 95 PHKIDCLRHWKREYSMETVLLDLKKEMASSSNRKLPQPP 133
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 391 FKNANLLHLSKYKNTHVQTLFLSSLVRKFSVRSIFL 498
+K L LSK TH+ + FLS L F SIFL
Sbjct: 75 YKGDKRLVLSKVLITHIISAFLSFLSAIFVFFSIFL 110
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 430 NTHVQTLFLSSLVRKFS 480
NTH QTLF SS FS
Sbjct: 292 NTHEQTLFPSSATNSFS 308
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 403 NLLHLSKYKNTHVQTLFLSSLVRKFSVRSIFLSTL 507
N HL K + + V TLF+S L S+ STL
Sbjct: 265 NTSHLEKQRISTVATLFISKLFEIPSLSEYLSSTL 299
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,227,684
Number of Sequences: 5004
Number of extensions: 46362
Number of successful extensions: 156
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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