Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313C01f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47222| Best HMM Match : UQ_con (HMM E-Value=5) 95 3e-20
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0) 92 2e-19
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37) 73 2e-13
SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30) 73 2e-13
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0) 52 2e-07
SB_57663| Best HMM Match : UQ_con (HMM E-Value=0.24) 48 4e-06
SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 31 0.58
SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18) 30 1.3
SB_51777| Best HMM Match : RpoE2 (HMM E-Value=8.7) 30 1.3
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 30 1.3
SB_292| Best HMM Match : HEAT (HMM E-Value=4.6e-29) 29 1.8
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18) 29 2.3
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37) 28 5.4
SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06) 28 5.4
SB_3435| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21) 27 7.1
SB_59683| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21) 27 7.1
SB_48398| Best HMM Match : BBE (HMM E-Value=4.1) 27 7.1
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7) 27 7.1
SB_46972| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_31707| Best HMM Match : Extensin_2 (HMM E-Value=0.19) 27 9.4
SB_24498| Best HMM Match : Galactosyl_T_2 (HMM E-Value=0) 27 9.4
>SB_47222| Best HMM Match : UQ_con (HMM E-Value=5)
Length = 46
Score = 95.1 bits (226), Expect = 3e-20
Identities = 40/45 (88%), Positives = 44/45 (97%)
Frame = +1
Query: 64 LLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYAM 198
LLSICSLLCDPNPDDPLVP+IARIYKTD+ KYNELA+EWT+KYAM
Sbjct: 2 LLSICSLLCDPNPDDPLVPDIARIYKTDKPKYNELAKEWTKKYAM 46
>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 226
Score = 92.3 bits (219), Expect = 2e-19
Identities = 41/65 (63%), Positives = 51/65 (78%)
Frame = +1
Query: 1 GSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREW 180
G +CLDIL+ WSPALTISKVLLSICSLL D NP DPLV IA +Y +R +++ A+EW
Sbjct: 161 GMVCLDILKDSWSPALTISKVLLSICSLLTDCNPADPLVGSIAALYVQNRSEHDATAKEW 220
Query: 181 TRKYA 195
T++YA
Sbjct: 221 TKRYA 225
>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
Length = 190
Score = 72.5 bits (170), Expect = 2e-13
Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Frame = +1
Query: 1 GSICLDILR----AQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNEL 168
G ICLD L+ W PAL IS VL +I L+ +PNPDDPL+ EI+ +K ++ ++ E
Sbjct: 47 GRICLDTLKMPPKGMWKPALNISSVLSTILILMAEPNPDDPLMAEISNEFKYNKAQFLEK 106
Query: 169 AREWTRKYAM 198
A+EWT K+AM
Sbjct: 107 AKEWTLKFAM 116
>SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)
Length = 204
Score = 72.5 bits (170), Expect = 2e-13
Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Frame = +1
Query: 1 GSICLDILR----AQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNEL 168
G ICLD L+ W PAL IS VL +I L+ +PNPDDPL+ EI+ +K ++ ++ E
Sbjct: 61 GRICLDTLKMPPKGMWKPALNISSVLSTILILMAEPNPDDPLMAEISNEFKYNKAQFLEK 120
Query: 169 AREWTRKYAM 198
A+EWT K+AM
Sbjct: 121 AKEWTLKFAM 130
>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 145
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +1
Query: 1 GSICLDILRAQ-WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELARE 177
G +CL I+ + W PA +V+ ++ +L+ DP P+ PL ++A Y D++K+ + A +
Sbjct: 74 GQVCLPIISPENWKPATKTEQVIQALLALVHDPEPEHPLRADLAEEYSKDKKKFMKNAED 133
Query: 178 WTRKY 192
T+KY
Sbjct: 134 CTKKY 138
>SB_57663| Best HMM Match : UQ_con (HMM E-Value=0.24)
Length = 48
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = +1
Query: 31 QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTD 147
+WSPAL I VLLSI +LL PNPDDPL ++A +K +
Sbjct: 2 KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKVN 40
>SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/65 (33%), Positives = 37/65 (56%)
Frame = +1
Query: 1 GSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREW 180
G IC++ L+ W P L I +VLL++ LL PNP+ L E ++ + Y++ A+ +
Sbjct: 160 GEICVNTLKKDWKPDLGIKQVLLTVKCLLIVPNPESALNEEAGKLLLERYDDYSKRAKMF 219
Query: 181 TRKYA 195
T +A
Sbjct: 220 TEIHA 224
>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 31.9 bits (69), Expect = 0.33
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 31 QWSPALTISKVLLSICSLLCDPNPDDP 111
+W P T+ ++LS+ S+L +PN + P
Sbjct: 437 RWRPIHTVETIMLSVISMLAEPNDESP 463
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 31 QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRE 153
+W+P + +LLS+ SLL +PN P + + +++ RE
Sbjct: 1229 RWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRE 1269
>SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18)
Length = 215
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 1 GSICLDILRAQWSPALTISKVLLSICSLLCDPNPDDPLVP 120
GS+CL +L W+ + + ++ + L +PN +DPL P
Sbjct: 87 GSVCLSLLD-DWNESNDLEDLVQGLLFLFYNPNLEDPLSP 125
>SB_51777| Best HMM Match : RpoE2 (HMM E-Value=8.7)
Length = 142
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 331 HCKNLKGYFRICLISVMAVIFKNANLLHLSKYKNTHVQTLFLSSLVRK 474
HC +GYF IC+ +++ + K+ N+ + H T+F VRK
Sbjct: 18 HCDKSRGYFSICIKNLLCLKCKDLNVEDCRSVQG-HPTTIFGRISVRK 64
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 115 PKGRLGWDRIEVSRLRATLWIW*ALVTTVHAECQDRW 5
P RL W+R+E+SR+ LW W V + Q W
Sbjct: 166 PLFRLHWNRVEMSRVMVFLW-WIKFALRVSMQKQINW 201
>SB_292| Best HMM Match : HEAT (HMM E-Value=4.6e-29)
Length = 1239
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 37 SPALTISKVLLSICSLLCDPNPD--DPLVPEIARIYKTDREK 156
S +LTISK + IC LL DPN + + + IY+ EK
Sbjct: 116 SSSLTISKFVPHICKLLGDPNSQVRERAIDTLVEIYRHVGEK 157
>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
Length = 2111
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -2
Query: 187 SSSTHGLIHCTFLCLFYRS*QFLAPKGRLGWDRIEVSRLRATLWIW*ALVTTV 29
++STH CT L F F P ++ W +I + L + + L+TT+
Sbjct: 1532 TNSTHTHCLCTHLTAFASD--FFVPPNKIDWSKITLENLLSNFTVTAILLTTI 1582
>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
Length = 1188
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 59 KCCSQSAHFYAIPTQTTLWCQKLLGSIKQTE 151
KCCSQ FYA +T C K L + E
Sbjct: 301 KCCSQGCTFYA-TAETAFLCSKCLNEYLRKE 330
>SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)
Length = 512
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 121 EIARIYKTDREKYNELAR 174
+IA+IY+T RE YNE R
Sbjct: 171 QIAKIYQTKRESYNECER 188
>SB_3435| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)
Length = 314
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 355 FRICLISVMAVIFKNANLLHLSKYKNTHVQTLFLSSLVRKFSV 483
FRIC++ V+ IF + Y NT + F ++++ F+V
Sbjct: 150 FRICIVLVVIWIFAAVFTILRMFYPNTAINAFFTTAILIGFAV 192
>SB_59683| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)
Length = 325
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 355 FRICLISVMAVIFKNANLLHLSKYKNTHVQTLFLSSLVRKFSV 483
FRIC++ V+ IF + Y NT + F ++++ F+V
Sbjct: 161 FRICIVLVVIWIFAAVFTILRMFYPNTAINAFFTTAILIGFAV 203
>SB_48398| Best HMM Match : BBE (HMM E-Value=4.1)
Length = 243
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 325 FGHCKNLKGYFRICLISVMAVIFKNANLLHLSK 423
F HCK++ YF SV +I K+ L LS+
Sbjct: 134 FSHCKDVNDYFDSFYASVERIIDKHVPLKKLSR 166
>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
Length = 1815
Score = 27.5 bits (58), Expect = 7.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 76 CSLLCDPNPDDPLVPE 123
C + DPNP DP +P+
Sbjct: 1311 CGTITDPNPKDPYIPD 1326
>SB_46972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 88
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 94 PNPDDPLVPEIARIYKTDREKYNELAREW 180
P+P P E + +K + EKY L + W
Sbjct: 31 PSPAAPAPSEKLKAFKEEEEKYENLTKYW 59
>SB_31707| Best HMM Match : Extensin_2 (HMM E-Value=0.19)
Length = 309
Score = 27.1 bits (57), Expect = 9.4
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Frame = +1
Query: 94 PNPDDPLVPEIARIYKTDREKYNELAREWTRKYAM**VNCDIN-KTYTHT-----SPQPG 255
P+P P PE A Y R +Y +YA +CD N +T + T +P P
Sbjct: 215 PHPYPPRRPEYAHPYPPRRPEYAHPFLPLPPEYAHLIPHCDQNTRTLSPTATTIRAPLPR 274
Query: 256 LYPPTLVPIPY 288
L P PIP+
Sbjct: 275 LRPEYAHPIPH 285
>SB_24498| Best HMM Match : Galactosyl_T_2 (HMM E-Value=0)
Length = 446
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 31 QWSPALTISKVLLSICSLL 87
+WSP ++ K+LLS+ S+L
Sbjct: 9 RWSPVQSVEKILLSVISML 27
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,671,353
Number of Sequences: 59808
Number of extensions: 348881
Number of successful extensions: 842
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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