Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313B10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   5.2  
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          25   9.0  

>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -2

Query: 490 LXNQFYPRDSGIYCKKFYSSQKVGGXCPNRFCKKRFIIFH 371
           + N FY R   +  KK ++  ++ G   + F  K+  ++H
Sbjct: 159 IMNDFYHRAKAVLSKKHFTLPRIFGMTASPFTGKKGNLYH 198


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 156 SSEPSESYARIFRRFVK*SSTLNSS-DDAREFPPNLLEFGIFSR 28
           S   SE   +IFR+ V+ +S +NS    A    P+ ++F I SR
Sbjct: 162 SHPESEPLEKIFRKLVEENSEMNSQVSKANIHAPDDMQFMIKSR 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,338
Number of Sequences: 5004
Number of extensions: 39247
Number of successful extensions: 54
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)