Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313B09f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)                 29   3.1  
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)             28   4.1  
SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)                    28   5.4  
SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)                28   5.4  
SB_18464| Best HMM Match : AFG1_ATPase (HMM E-Value=0.48)              27   7.1  
SB_46777| Best HMM Match : RNA_pol_Rpb2_4 (HMM E-Value=2.1)            27   9.4  
SB_37421| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_25568| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 24/70 (34%), Positives = 30/70 (42%)
 Frame = +2

Query: 302 EFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDTEEEELA 481
           E   +E KFY EVHA               R  I +G  EP D+EC   W  D E+E+ A
Sbjct: 141 ECCKLEGKFYEEVHALECKYAEKFKPFYEKRRNIASGGVEPTDEEC--RWPSDAEDEDEA 198

Query: 482 RAVQNAAITE 511
              +    TE
Sbjct: 199 EEKEEKEATE 208


>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
          Length = 667

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 254 VGMPSLLHEGDL*WPLSFHYGSRHFSTGVALVH 156
           V +PS +HE D   PL F +GS +  T + L H
Sbjct: 207 VPLPSSIHEADDMLPLCFEFGSLNSQTLLMLEH 239


>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
          Length = 365

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 413 TYEPNDDECLNPWRDDTEEEEL 478
           TYE  D+ C +PW+D +++ E+
Sbjct: 268 TYERLDNSCTSPWQDVSQKSEV 289


>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
          Length = 601

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 416 YEPNDDECLNPWRDD-TEEEELARAVQNAAITE 511
           +  N D+C+N   +  T + EL R +QNAA TE
Sbjct: 468 HNANSDDCINNRGEPYTTKAELVRILQNAAETE 500


>SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)
          Length = 477

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 475 LFFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYF 335
           LFF   +T    +F +  FI   +     F K +   F++ F CMYF
Sbjct: 13  LFFLLFLTV---SFHVFMFIVVPYVTKRPFFKNIPAIFMYIFMCMYF 56


>SB_18464| Best HMM Match : AFG1_ATPase (HMM E-Value=0.48)
          Length = 675

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 104 RHQNVRRYPYLIFHSHRRQNFPKRKMA 24
           RHQ ++ +  L++H  +R NF +R  A
Sbjct: 217 RHQYIQEFGALVYHWRQRDNFCRRNNA 243


>SB_46777| Best HMM Match : RNA_pol_Rpb2_4 (HMM E-Value=2.1)
          Length = 519

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +2

Query: 161 LAQHLLKSGVTRNEMIAAITNRLHA---EAMASLPPNVRRRI 277
           L++HL  + +T  E+   +  +L     + +  +PP+VRRRI
Sbjct: 306 LSEHLRATSMTGREISGPLHRKLSTTDRQCLLGIPPSVRRRI 347


>SB_37421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 110 CGRHQNVRRYPYLIFHSHRRQNFPKRKM 27
           C R  N+R YP +++ S+ R+  P R +
Sbjct: 39  CVRMGNLRMYPCIVYSSYDRERGPYRNL 66


>SB_25568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 110 CGRHQNVRRYPYLIFHSHRRQNFPKRKM 27
           C R  N+R YP +++ S+ R+  P R +
Sbjct: 39  CVRMGNLRMYPCIVYSSYDRERGPYRNL 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,675,948
Number of Sequences: 59808
Number of extensions: 306173
Number of successful extensions: 789
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)