Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313B09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    47   7e-06
L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical pr...    29   2.7  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 26/88 (29%), Positives = 42/88 (47%)
 Frame = +2

Query: 236 EAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGT 415
           + + +LP NV++R+ AL+ LQ + + IE+ FY  VH                R  IV G 
Sbjct: 17  DMIQALPLNVKQRVCALKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGE 76

Query: 416 YEPNDDECLNPWRDDTEEEELARAVQNA 499
            EP  ++   P  +  E ++LA   + A
Sbjct: 77  VEPTKEQIDTPILEGLEGDQLAELYKAA 104


>L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical
           protein ZK1236.1 protein.
          Length = 645

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 349 ECMYFTVKLGLNVDKLLLKSSQGADSPTNI 260
           EC++ + K GLNVDK+L        +PT I
Sbjct: 188 ECLHISAKSGLNVDKVLEAIIDRVPAPTAI 217


>Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical
           protein T14D7.2 protein.
          Length = 734

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -2

Query: 472 FFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFI---FAFECMYFTVKLGLNVDKL 302
           + F +I P V T++++ F    + +  LFI   V+  I   FA  C   +    LN+++L
Sbjct: 648 YLFHMI-PVVLTYMLVPFPIYFNTQIPLFIHCFVQLLITYFFAIICTMVSELPALNIERL 706

Query: 301 LLKS 290
           LL S
Sbjct: 707 LLAS 710


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,524,086
Number of Sequences: 27780
Number of extensions: 220361
Number of successful extensions: 612
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)