Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313B09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    45   3e-05
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta...    42   3e-04
At4g17020.2 68417.m02567 transcription factor-related contains w...    28   3.3  
At4g17020.1 68417.m02568 transcription factor-related contains w...    28   3.3  
At2g26530.1 68415.m03183 expressed protein                             27   5.8  

>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = +2

Query: 233 AEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNG 412
           ++ + +L PNVR+R+ ALR +Q +  ++EAKF  E                  R  IVNG
Sbjct: 41  SDVLENLTPNVRKRVDALRDIQSQHDELEAKFREERAILEAKYQTLYQPLYVKRYEIVNG 100

Query: 413 TYE----PNDDECLNPWRDDTEEEE 475
           T E    P DD  ++   + T EE+
Sbjct: 101 TTEVELAPEDDTKVDQGEEKTAEEK 125


>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 379

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = +2

Query: 230 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 409
           H++ + +L P VR+R+  LR +Q ++ ++EAKF+ E  A               R  IVN
Sbjct: 40  HSDVLENLTPPVRKRVEFLREIQNQYDEMEAKFFEERAALEAKYQKLYQPLYTKRYEIVN 99

Query: 410 GTYE 421
           G  E
Sbjct: 100 GVVE 103


>At4g17020.2 68417.m02567 transcription factor-related contains weak
           similarity to Swiss-Prot:Q92759 TFIIH basal
           transcription factor complex p52 subunit (Basic
           transcription factor 52 kDa subunit, BTF2-p52, General
           transcription factor IIH polypeptide 4) [Homo sapiens]
          Length = 462

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 182 SGVTRNEMIAAITNRLH---AEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 337
           +G+T +++I  +    H   A+ + S+P NV  +IR   T  +     +A FY E
Sbjct: 349 NGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDE 403


>At4g17020.1 68417.m02568 transcription factor-related contains weak
           similarity to Swiss-Prot:Q92759 TFIIH basal
           transcription factor complex p52 subunit (Basic
           transcription factor 52 kDa subunit, BTF2-p52, General
           transcription factor IIH polypeptide 4) [Homo sapiens]
          Length = 452

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 182 SGVTRNEMIAAITNRLH---AEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 337
           +G+T +++I  +    H   A+ + S+P NV  +IR   T  +     +A FY E
Sbjct: 349 NGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDE 403


>At2g26530.1 68415.m03183 expressed protein
          Length = 317

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 345 HSNANMKNFTSLFMKSEXXXXXXXXXXXXXNVSTHGVMTLKKKS 476
           H+  ++K FTSLF K E             +VS H    + KK+
Sbjct: 253 HNKDSVKTFTSLFRKQEDTKNSSSRGRGSSSVSAHEFHYMSKKA 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,804,304
Number of Sequences: 28952
Number of extensions: 203567
Number of successful extensions: 524
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)