Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313B08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    26   3.0  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   3.9  
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    26   3.9  

>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = -1

Query: 332 THRPAHSGGGTPSRTLARTSSPGALISGALTSLTLPNLVGMNGRLAQSAFIHTVTKTIQT 153
           T  P+ SG  T  R     ++ GA+ +G   S    +L        Q     T T  ++T
Sbjct: 148 TPAPSRSGASTAGRRRTSATTRGAIQNGVYHSPYTASLADSGSTRGQKVSNATATTQLET 207

Query: 152 K 150
           K
Sbjct: 208 K 208


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 158 QTKTFPLNISN*VQIQTPPHSVRDS 84
           Q  +FPL   N  Q + P HS+RD+
Sbjct: 501 QPHSFPLRKQNVAQSEFPKHSLRDN 525


>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 409 RVHIE*RMSSPFRLHQRRTLVLPAGPRTALHTAAVAPPRG 290
           R+H   + ++ F +H +RT++  A   +AL T  V P  G
Sbjct: 38  RIHQVVQEATKFMVHSKRTVLTSADISSALRTLNVEPLYG 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,272,981
Number of Sequences: 5004
Number of extensions: 47667
Number of successful extensions: 175
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)