Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313B08f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 35 0.035
SB_18275| Best HMM Match : Kazal_1 (HMM E-Value=0) 34 0.062
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 33 0.19
SB_19262| Best HMM Match : Laminin_EGF (HMM E-Value=0.36) 32 0.25
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0) 32 0.33
SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_42623| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_52208| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0) 30 1.3
SB_15403| Best HMM Match : CH (HMM E-Value=0) 29 1.8
SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05) 29 2.3
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_35446| Best HMM Match : Mucin (HMM E-Value=1.3) 29 3.1
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_41194| Best HMM Match : Collagen (HMM E-Value=5.9e-29) 28 5.4
SB_16033| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_49457| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_3798| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 27 7.1
SB_55018| Best HMM Match : AT_hook (HMM E-Value=2.9) 27 9.4
SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79) 27 9.4
SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_40786| Best HMM Match : WSC (HMM E-Value=0.44) 27 9.4
SB_7820| Best HMM Match : zf-HYPF (HMM E-Value=2.5) 27 9.4
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 35.1 bits (77), Expect = 0.035
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +1
Query: 286 RVREGVPPPLCAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 465
+ R+G P +C G C A PVC D + ++ C L+ SCR++ V S G C
Sbjct: 5285 KARDGRPECVCDGICSLVYA-PVCGTDG----QEYSNECNLQIASCRKNELIEVASRGSC 5339
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 349 PVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 465
PVC D +T+ CEL +C+ + V SL C
Sbjct: 5630 PVCGSDG----KTYNNECELRQYACKSDSLITVASLSSC 5664
>SB_18275| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 325
Score = 34.3 bits (75), Expect = 0.062
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +1
Query: 289 VREGVPPPLCAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 465
VR G P +C C A PVC D +T+ C LE SC+ +T +V G C
Sbjct: 33 VRYGQPVCVCNEACTREYA-PVCGSDG----KTYPNPCALEVESCKTNTRISVIKKGSC 86
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 32.7 bits (71), Expect = 0.19
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 280 RARVREGVPPPLCAGRCVAPPA-GPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSL 456
R +V +G P +C P + PVC+ T TF T C +E +C ES V
Sbjct: 132 RCQVIKGKPQCVCRDVRECPSSMDPVCST----TGETFITKCHMEVEACTESRSMMVARR 187
Query: 457 GVC 465
G C
Sbjct: 188 GEC 190
Score = 31.9 bits (69), Expect = 0.33
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 316 CAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 465
C PA VC +D +T+ + C +EA CR + + LG C
Sbjct: 687 CPSESDCLPAAKVCGYDGK-VMKTYQSQCHMEAEGCRMAKDLQLIRLGSC 735
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +1
Query: 289 VREGVPPPLCAGRCVAPPA-GPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 465
V +G P +C P + PVC+ T TF T C +E +C ES V G C
Sbjct: 64 VIKGKPQCVCRDVRECPSSMDPVCST----TGETFITKCHMEVEACTESRSMMVARRGEC 119
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Frame = +1
Query: 265 PGELVRARVREGVPPPLCAGRCVAPPAG--PVCA-FDAAGTARTFATLCELEAVSCREST 435
P +LV R +CV P PV + F +T+ C L+ SC E
Sbjct: 932 PCQLVSCRFYSKCQRRRGGAQCVCPQTSECPVASSFVCGSNGKTYTNECLLKVDSCAEQK 991
Query: 436 YYAVTSLGVC 465
+V G C
Sbjct: 992 EISVKHKGAC 1001
>SB_19262| Best HMM Match : Laminin_EGF (HMM E-Value=0.36)
Length = 1173
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -3
Query: 474 NYSANSQTCDGVIRAFATRNSLEFT*SSECPRRSGCIKGAHWSCRRGHAPP 322
N + S + D + AF NS + +CP R C+ G H +C G++ P
Sbjct: 293 NLNDRSASSDAMTSAF---NSAVLPVAYQCPIRESCLGGLHGACSMGYSGP 340
>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1488
Score = 31.9 bits (69), Expect = 0.33
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 316 CAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 465
C C + A PVC D RT+++ C ++A +C+ T AV G+C
Sbjct: 803 CNTECPSE-ASPVCGQDG----RTYSSTCAMDARACQAQTSIAVKHPGLC 847
>SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 753
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -2
Query: 400 IE*RMSSPFRLHQRRTLVLPAGPRTALHTAAVAP 299
+E + SS L Q+ T + PA PR+AL TA V+P
Sbjct: 95 LELQQSSMALLQQQSTPIAPARPRSALQTAPVSP 128
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 286 RVREGVPPPLCAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSC 423
+V++ P C RC+ P PVC D +T+ LCE+ SC
Sbjct: 4227 KVKDEKPVCECPSRCL-PDKEPVCGADG----KTYRNLCEIRKASC 4267
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +1
Query: 298 GVPPPLCAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 465
G P +C C + + PVC D +T+ CEL+ +C V S G C
Sbjct: 3964 GQPTCVCNKNCPST-SKPVCGSDG----KTYKNECELKRAACESKKNVTVASQGEC 4014
>SB_42623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -3
Query: 387 CPRRS--GCIKGAHWSCRRGHAPPCTQRRWHPLAD 289
C +RS C +G+H SC +G P C Q +HP D
Sbjct: 87 CDQRSHPSCDQGSHPSCDQGSHPSCDQ-EYHPSCD 120
>SB_52208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 640
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 468 SANSQTCDGVI-RAFATRNSLEFT*SSECPRRSGCIKGAHWSCRR 337
S+ + C G++ R FA+ ++E S++C + S G +CRR
Sbjct: 350 SSQKRACSGILSRPFASSETIEMENSNDCKQGSLSRAGGEVNCRR 394
>SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1568
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +1
Query: 286 RVREGVPPPLCAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 465
R ++G P +C C + PVC D T+ LC L +C ++T + G C
Sbjct: 588 RAQDGKPVCVCPPGCPSE-VKPVCGTDGV----TYDNLCSLRLKACTDNTRTRFKAFGEC 642
>SB_15403| Best HMM Match : CH (HMM E-Value=0)
Length = 1907
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +1
Query: 295 EGVPPPLCAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 465
+G +C+ C A PVC D T+ LC L A C+ T+ G C
Sbjct: 717 DGKTKCVCSAACTREYA-PVCGSDG----NTYNNLCLLTAARCQSQTFIYRAHFGTC 768
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = +1
Query: 328 CVAPPAGPVCAFDAAGT-ARTFATLCELEAVSCRESTYYAVTSLGVC 465
C P A P+ GT T+ LC L A SCR V G C
Sbjct: 1307 CPDPAACPLVKSRVCGTDGITYDNLCRLRAESCRRYQPVNVLHSGYC 1353
>SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 334 PRTALHTAAVAPPRGPSLGPAHPGLSYPVR 245
P H APP+ P+ GP HPG +P R
Sbjct: 62 PEVHGHLLQGAPPKAPA-GPEHPGRGHPRR 90
>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
Length = 1023
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 220 RLGSVKEVSAPDMRAPGELVRARVREGVPPPLCAGRCVAPPAGP 351
RLG V E S +MR P R + PP + +A P P
Sbjct: 284 RLGRVSEESGDEMRVPRGGASRGARRALSPPAGSAAAIAIPGRP 327
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 349 PVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 465
PVCA +T++ C+++A +C T V S G C
Sbjct: 1606 PVCA----SNGKTYSNRCDMDADACIRDTKLTVVSQGAC 1640
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 349 PVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 465
PVC D +T+ CE+ A +C +ST V G C
Sbjct: 1305 PVCGTDG----KTYGNKCEMRASACLKSTMVTVAYPGEC 1339
>SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +3
Query: 216 NEIGERQRSQRTGYESPG*AGPSEGPRGGATAAVCRAVRGPAGRTSV 356
NE G+R R R G+ P G GPRGG C + + SV
Sbjct: 447 NERGQR-RGGRGGHGPPRGGGGFSGPRGGGQQQACYGTEVSSRKGSV 492
>SB_35446| Best HMM Match : Mucin (HMM E-Value=1.3)
Length = 241
Score = 28.7 bits (61), Expect = 3.1
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Frame = -1
Query: 407 SSHRVANVLAVPAASKA--HTG-PAGGATHRPAHSGGGTPSRTLARTSSPGALISGALTS 237
S+ VA+ + VP S + H P A H PA S T +R R S +G T+
Sbjct: 65 SNQVVASQMEVPQGSTSAQHLAEPNKQAAHEPAPSYRSTCNRRYRRRDSARKAAAGGRTA 124
Query: 236 LTLPNLVGMNGRLAQSAFIHTVTKTIQTKTFPLNISN*VQIQTPPHSVR 90
+S + ++T+Q T +S + +TPP S R
Sbjct: 125 -------DQGSTACRSGDSASPSRTVQISTVSNGVSRHLNTRTPPISAR 166
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/46 (26%), Positives = 18/46 (39%)
Frame = +1
Query: 328 CVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 465
C+ P + A T+ + C LE SC+ Y + G C
Sbjct: 1861 CICPTCPKAKDYLCASNNLTYMSKCHLERASCQLGRYLTIKQKGKC 1906
>SB_41194| Best HMM Match : Collagen (HMM E-Value=5.9e-29)
Length = 407
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +3
Query: 267 G*AGPSEGPRGGATAAVCRAVRGPAGRTSVRL*CSRNGEDIRYS 398
G GP GP+G A GPAG + NGED+RYS
Sbjct: 49 GQRGPP-GPKGSRGIAGEAGPDGPAGPAGLDGKNGINGEDVRYS 91
>SB_16033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 347 PAGGATHRPAHSGGGTPSRTLARTSSP 267
PAG R AH+ P+R AR +SP
Sbjct: 304 PAGNEASRTAHASRPAPTRETARETSP 330
>SB_49457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -3
Query: 387 CPRRSGCIKGAHWSCRRGHAPP-CTQ 313
CP S C+ G CR G+ P C+Q
Sbjct: 233 CPIESSCLGGLESRCREGYTGPLCSQ 258
>SB_3798| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 334 APPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 465
+P + +C D RT+++ C L SC Y++ +G C
Sbjct: 226 SPRSTEICGTDG----RTYSSFCALREHSCNVGRLYSIKHIGRC 265
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/50 (24%), Positives = 18/50 (36%)
Frame = +1
Query: 316 CAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 465
C C + + P T+ +LC L +C+ V LG C
Sbjct: 127 CVSNCSSCNSSPADTEVCGADGVTYGSLCRLRVATCKLGKTIGVAYLGSC 176
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 241 VSAPDMRAPGELVRARVREGVPPPLCAGRCVAPP 342
+SA + + ++ V VPPP R VAPP
Sbjct: 37 ISANTFKMASQAIQEAVVHNVPPPQITARPVAPP 70
>SB_55018| Best HMM Match : AT_hook (HMM E-Value=2.9)
Length = 130
Score = 27.1 bits (57), Expect = 9.4
Identities = 21/81 (25%), Positives = 38/81 (46%)
Frame = -1
Query: 314 SGGGTPSRTLARTSSPGALISGALTSLTLPNLVGMNGRLAQSAFIHTVTKTIQTKTFPLN 135
S G+P+R AR + G + + L LP+ V N + ++ + + +T T+P
Sbjct: 28 SNNGSPARKRARPNKYGGMSEEDVMKLLLPDRVAENLDILFVVYV-MPSSSGRTMTYP-R 85
Query: 134 ISN*VQIQTPPHSVRDSLNTK 72
S+ ++ T S+RD K
Sbjct: 86 ASDKLKFFTELKSLRDEAKLK 106
>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
Length = 308
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -1
Query: 413 ASSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGG-GTPSRTLARTSSPGALISGALTS 237
A+++ + + A PAA+K TG + GAT A S G L TS+ G ++
Sbjct: 63 ATTTANTSGLFATPAATKTTTGISFGATGTQATSASTGLSFGQLGNTSTSTLTAFGQPST 122
Query: 236 LTLP 225
+ P
Sbjct: 123 TSAP 126
>SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 827
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +1
Query: 238 EVSAPDMRAPGELVRARV-REGVPPPLCAGRCVAPPAGPVCAFDAAGTARTFATLCELEA 414
+VS P ++ G+L++ + VP C+ +C AGT ++F C E
Sbjct: 443 QVSKPQLQVNGKLIQWKTDTNAVPTSECSKKC------------PAGTKQSFINRCCWEC 490
Query: 415 VSCRESTYYAVTSLGVC 465
C E T + L C
Sbjct: 491 FQCSEGTVSSEPGLTNC 507
>SB_40786| Best HMM Match : WSC (HMM E-Value=0.44)
Length = 230
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 353 TGPAGGATHRPAHSGGGTPSRTLARTSSPGALISGAL 243
T P P+ +G GTP+R T SP ++SG L
Sbjct: 135 TTPTPTKRPSPSPTGTGTPTRKPEPTLSPTRMLSGLL 171
>SB_7820| Best HMM Match : zf-HYPF (HMM E-Value=2.5)
Length = 307
Score = 27.1 bits (57), Expect = 9.4
Identities = 22/100 (22%), Positives = 44/100 (44%)
Frame = -1
Query: 371 AASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALISGALTSLTLPNLVGMNGRLAQ 192
A+++ T GG + + TPS T A T+ P + L T + + AQ
Sbjct: 158 ASTQGATPTTGGPSGPTGGASSATPSATTASTAPPTTPSTTTLAPTTPLSEKEAKKQEAQ 217
Query: 191 SAFIHTVTKTIQTKTFPLNISN*VQIQTPPHSVRDSLNTK 72
+ + + +T+ + L ++ +PP SV + ++T+
Sbjct: 218 ATVLTNLYRTMH-QVLSLLLAQNESPSSPPSSVLNVISTE 256
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,003,461
Number of Sequences: 59808
Number of extensions: 406858
Number of successful extensions: 1304
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -