Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313B08f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center... 33 0.12
U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center... 33 0.12
U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center... 33 0.12
U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center... 33 0.12
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 31 0.38
AF068708-11|AAC17757.1| 136|Caenorhabditis elegans Hypothetical... 31 0.66
AF000265-9|AAB52943.2| 449|Caenorhabditis elegans Hypothetical ... 31 0.66
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 29 1.5
U80445-7|AAB37798.1| 368|Caenorhabditis elegans Hypothetical pr... 29 2.0
U80437-6|AAB37621.1| 368|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z81543-3|CAB04425.1| 322|Caenorhabditis elegans Hypothetical pr... 27 6.2
AL021469-1|CAA16287.1| 207|Caenorhabditis elegans Hypothetical ... 27 6.2
AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 27 6.2
Z81031-4|CAF31468.2| 421|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z81031-3|CAF31467.1| 455|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z81031-2|CAF31464.1| 429|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z81031-1|CAB02718.4| 432|Caenorhabditis elegans Hypothetical pr... 27 8.1
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 27 8.1
U43283-3|AAC69024.2| 880|Caenorhabditis elegans Hypothetical pr... 27 8.1
U00036-16|AAK29860.1| 233|Caenorhabditis elegans Hypothetical p... 27 8.1
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 27 8.1
AF539814-1|AAN16459.1| 421|Caenorhabditis elegans tyramine rece... 27 8.1
AF539813-1|AAN16458.1| 444|Caenorhabditis elegans tyramine rece... 27 8.1
AF143147-1|AAD37862.1| 233|Caenorhabditis elegans R151.8A prote... 27 8.1
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 27 8.1
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 27 8.1
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 24 9.2
>U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center
kinase family protein1, isoform d protein.
Length = 638
Score = 33.1 bits (72), Expect = 0.12
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -1
Query: 410 SSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTS---SPGALISGALT 240
S + ++ A + ++HT +GGAT S G+P+ +LART SP SG+
Sbjct: 382 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQSMVSPSGQRSGSAQ 441
Query: 239 SLTL 228
S L
Sbjct: 442 SWEL 445
>U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center
kinase family protein1, isoform b protein.
Length = 651
Score = 33.1 bits (72), Expect = 0.12
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -1
Query: 410 SSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTS---SPGALISGALT 240
S + ++ A + ++HT +GGAT S G+P+ +LART SP SG+
Sbjct: 395 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQSMVSPSGQRSGSAQ 454
Query: 239 SLTL 228
S L
Sbjct: 455 SWEL 458
>U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center
kinase family protein1, isoform c protein.
Length = 650
Score = 33.1 bits (72), Expect = 0.12
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -1
Query: 410 SSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTS---SPGALISGALT 240
S + ++ A + ++HT +GGAT S G+P+ +LART SP SG+
Sbjct: 394 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQSMVSPSGQRSGSAQ 453
Query: 239 SLTL 228
S L
Sbjct: 454 SWEL 457
>U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center
kinase family protein1, isoform a protein.
Length = 653
Score = 33.1 bits (72), Expect = 0.12
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -1
Query: 410 SSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTS---SPGALISGALT 240
S + ++ A + ++HT +GGAT S G+P+ +LART SP SG+
Sbjct: 397 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQSMVSPSGQRSGSAQ 456
Query: 239 SLTL 228
S L
Sbjct: 457 SWEL 460
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 31.5 bits (68), Expect = 0.38
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +1
Query: 304 PPPLCAGRCVAPPAGPVCAFDAAGT-ARTFATLCELEAVSCRESTYYAVTSLGVC 465
P +C C G V G+ T++ LCEL+ +C+ S+G+C
Sbjct: 798 PDCICPQSCNMNHLGIVANMTVCGSDGTTYSNLCELKMFACKHQIDVVPVSMGIC 852
>AF068708-11|AAC17757.1| 136|Caenorhabditis elegans Hypothetical
protein C18G1.1 protein.
Length = 136
Score = 30.7 bits (66), Expect = 0.66
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -2
Query: 184 LSIQSLKLYKQKPFRLTFPTESKYRHHRTAYEIVL 80
+S+ LK Y +KP R TE++ +H+RT + I+L
Sbjct: 45 ISLFPLKDYSRKPGRGPQRTEAEMKHYRTVFYIIL 79
>AF000265-9|AAB52943.2| 449|Caenorhabditis elegans Hypothetical
protein C18E3.2 protein.
Length = 449
Score = 30.7 bits (66), Expect = 0.66
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +1
Query: 244 SAPDMRAPGELVRARVREGVPPPLCAGRCVAPPAGPV 354
SAP MR PG G PP + R VAPPA P+
Sbjct: 21 SAPQMRRPGGFA------GQPPQMHGPRMVAPPAAPL 51
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = -1
Query: 416 TASSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALISGALTS 237
+ASS + + AS T +G +T P+ G + S T + + ISG+ S
Sbjct: 597 SASSIYSTLSGSTGSTASPGTTESSGSSTSGPSTISGSSASTVTGSTVTEASTISGSTES 656
Query: 236 LTLP 225
T+P
Sbjct: 657 STIP 660
>U80445-7|AAB37798.1| 368|Caenorhabditis elegans Hypothetical
protein C50F2.5 protein.
Length = 368
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -2
Query: 121 SKYRHHRTAYEIVLIRNTNVARLSNYQNARIVVF 20
+KY T E+V+ +N++ SNY++ R++VF
Sbjct: 189 TKYELELTDSEVVIDKNSDDPNASNYKSHRLIVF 222
>U80437-6|AAB37621.1| 368|Caenorhabditis elegans Hypothetical
protein C43E11.5 protein.
Length = 368
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -2
Query: 121 SKYRHHRTAYEIVLIRNTNVARLSNYQNARIVVF 20
+KY T E+V+ +N++ SNY++ R++VF
Sbjct: 189 TKYELELTDSEVVIDKNSDDPNASNYKSHRLIVF 222
>Z81543-3|CAB04425.1| 322|Caenorhabditis elegans Hypothetical
protein F49B2.3 protein.
Length = 322
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 350 GPAGGATHRPAHSGGGT 300
GP G HRP HS G T
Sbjct: 72 GPRGARDHRPRHSAGNT 88
>AL021469-1|CAA16287.1| 207|Caenorhabditis elegans Hypothetical
protein Y116A8B.1 protein.
Length = 207
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 350 GPAGGATHRPAHSGGGT 300
GP G HRP HS G T
Sbjct: 70 GPRGARDHRPRHSAGNT 86
>AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen
protein 99 protein.
Length = 627
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 261 SPG*AGPSEGPRGGATAAVCRAVRGPAG 344
SPG GP GP G A+ C ++GP G
Sbjct: 259 SPGPPGPP-GPPGVCHASQCTGIQGPPG 285
>Z81031-4|CAF31468.2| 421|Caenorhabditis elegans Hypothetical
protein C02D4.2f protein.
Length = 421
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 151 FVCIVLVTVWIKADCASLP 207
FVCIV+V VWI + S+P
Sbjct: 163 FVCIVIVIVWILSMLISVP 181
>Z81031-3|CAF31467.1| 455|Caenorhabditis elegans Hypothetical
protein C02D4.2e protein.
Length = 455
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 151 FVCIVLVTVWIKADCASLP 207
FVCIV+V VWI + S+P
Sbjct: 174 FVCIVIVIVWILSMLISVP 192
>Z81031-2|CAF31464.1| 429|Caenorhabditis elegans Hypothetical
protein C02D4.2b protein.
Length = 429
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 151 FVCIVLVTVWIKADCASLP 207
FVCIV+V VWI + S+P
Sbjct: 171 FVCIVIVIVWILSMLISVP 189
>Z81031-1|CAB02718.4| 432|Caenorhabditis elegans Hypothetical
protein C02D4.2a protein.
Length = 432
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 151 FVCIVLVTVWIKADCASLP 207
FVCIV+V VWI + S+P
Sbjct: 174 FVCIVIVIVWILSMLISVP 192
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/75 (25%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Frame = -1
Query: 422 HETASSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPS-RTLARTSSPGALISGA 246
HE + ++ A K H+GPA SG G P A G + G
Sbjct: 49 HELSFCKGSAKDIFAEVNFMKTHSGPAAPGNRTARQSGYGQPEVNPSANLQCEGCCLPGP 108
Query: 245 LTSLTLPNLVGMNGR 201
+P G GR
Sbjct: 109 PGPAGVPGKPGKPGR 123
>U43283-3|AAC69024.2| 880|Caenorhabditis elegans Hypothetical
protein T25G12.6 protein.
Length = 880
Score = 27.1 bits (57), Expect = 8.1
Identities = 21/81 (25%), Positives = 35/81 (43%)
Frame = -1
Query: 416 TASSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALISGALTS 237
T+ S V P AS TGP P +G + T++PG+ +S +L+S
Sbjct: 205 TSGPSGTTVTVPTTPCAS-VPTGPTKTPVTVPTSTGSVSRETKSPVTANPGSTVSTSLSS 263
Query: 236 LTLPNLVGMNGRLAQSAFIHT 174
+ +V + R + F+ T
Sbjct: 264 KPV-TVVTQSPRSTTTPFVKT 283
>U00036-16|AAK29860.1| 233|Caenorhabditis elegans Hypothetical
protein R151.10 protein.
Length = 233
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 247 APDMRAPGELVRARVREGVPPPLCAGRC 330
+P M +LVR + GVP LC G C
Sbjct: 88 SPAMPGAEKLVRHLLHTGVPVALCTGSC 115
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 237 RSQRTGYESPG*AGPSEGPRGGATAAVCR-AVRGPAG 344
RS+R GY G A EG GG + C GPAG
Sbjct: 88 RSRRGGYAEGG-AAAGEGGGGGGSCCSCGIGAAGPAG 123
>AF539814-1|AAN16459.1| 421|Caenorhabditis elegans tyramine
receptor short isoformSER-2a protein.
Length = 421
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 151 FVCIVLVTVWIKADCASLP 207
FVCIV+V VWI + S+P
Sbjct: 163 FVCIVIVIVWILSMLISVP 181
>AF539813-1|AAN16458.1| 444|Caenorhabditis elegans tyramine
receptor long isoformSER-2 protein.
Length = 444
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 151 FVCIVLVTVWIKADCASLP 207
FVCIV+V VWI + S+P
Sbjct: 163 FVCIVIVIVWILSMLISVP 181
>AF143147-1|AAD37862.1| 233|Caenorhabditis elegans R151.8A protein
protein.
Length = 233
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 247 APDMRAPGELVRARVREGVPPPLCAGRC 330
+P M +LVR + GVP LC G C
Sbjct: 88 SPAMPGAEKLVRHLLHTGVPVALCTGSC 115
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -1
Query: 437 YVLSRHETASSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRT-LARTSSPGA 261
Y + TA+SS ANV ++ A + A + T + A + TPS + +A +P
Sbjct: 2826 YGMPTTSTAASSSSTANVASMAAMAAAAQAASTPTTSKQASASTSTPSTSAVASAQTPST 2885
Query: 260 LI 255
+
Sbjct: 2886 SV 2887
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/75 (25%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Frame = -1
Query: 422 HETASSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPS-RTLARTSSPGALISGA 246
HE + ++ A K H+GPA SG G P A G + G
Sbjct: 49 HELSFCKGSAKDIFAEVNFMKTHSGPAAPGNRTARQSGYGQPEVNPSANLQCEGCCLPGP 108
Query: 245 LTSLTLPNLVGMNGR 201
+P G GR
Sbjct: 109 PGPAGVPGKPGKPGR 123
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 24.2 bits (50), Expect(2) = 9.2
Identities = 8/20 (40%), Positives = 8/20 (40%)
Frame = +1
Query: 316 CAGRCVAPPAGPVCAFDAAG 375
C G C PP P C G
Sbjct: 105 CGGGCAPPPPPPACGGGCGG 124
Score = 21.0 bits (42), Expect(2) = 9.2
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = +1
Query: 304 PPPLCAGRC 330
PPP C G C
Sbjct: 57 PPPACGGGC 65
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,946,137
Number of Sequences: 27780
Number of extensions: 298363
Number of successful extensions: 1164
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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