Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313B08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.36 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.47 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.47 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.4  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   5.8  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   7.7  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   7.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   7.7  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -1

Query: 341 GGATHRPAHSGGGTPS---RTLARTSSPGA 261
           G   H P H+  G PS    T+A TS+PG+
Sbjct: 209 GYGRHLPGHAQMGRPSYTTATMATTSTPGS 238


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -1

Query: 419 ETASSSHRVANVLAVPAASKAHTGPAGGATH--RPA-HSGGGTPSRTLARTSSPGALI 255
           ET SS      + + P++S + + PA GA    +P+  +GG T  + L R  S  +L+
Sbjct: 506 ETNSSPSPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQELKRLKSTVSLL 563


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 121 TQLEMLSGKVFVCIVLVTVWIKADCA-SLPFIPTR 222
           +QL + SG VFV I++  VW+  D A ++   PTR
Sbjct: 767 SQLIICSGLVFVQILINGVWMIIDPAKAMHHYPTR 801


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 64  VARLSNYQNARIVVFRPRAE 5
           + RLS   NAR VV   RAE
Sbjct: 188 IQRLSKKANARAVVLFTRAE 207


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 64  VARLSNYQNARIVVFRPRAE 5
           + RLS   NAR VV   RAE
Sbjct: 278 IQRLSKKANARAVVLFTRAE 297


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 145 KVFVCIVLVTVWIKADCASLP 207
           K FV   ++   + A CAS+P
Sbjct: 2   KFFVLFAILIAIVHASCASVP 22


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 301 PPRGPSLGPAH 269
           PP+ P  GP H
Sbjct: 169 PPQNPRFGPTH 179


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 301 PPRGPSLGPAH 269
           PP+ P  GP H
Sbjct: 169 PPQNPRFGPTH 179


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
 Frame = +1

Query: 118 WTQLEMLSGKVFVCIVLVTVWIKAD---CASLP 207
           W Q+ ++S +  +C+  +T  +      C S P
Sbjct: 421 WKQVALVSDRALLCVFFLTTIVSTTVILCGSPP 453


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 301 PPRGPSLGPAH 269
           PP+ P  GP H
Sbjct: 407 PPQNPRFGPTH 417


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,652
Number of Sequences: 438
Number of extensions: 3789
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)