Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS313B06f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465... 86 1e-17
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 55 4e-08
01_07_0359 - 43042675-43042758,43042956-43043024,43043099-430431... 29 1.7
03_05_0490 + 24866418-24867008 28 4.0
12_01_0152 - 1168928-1169377 28 5.2
11_01_0155 - 1287003-1287452 28 5.2
05_03_0042 - 7675244-7675846,7675946-7676101,7676444-7676511,768... 27 9.1
01_01_0308 + 2519384-2519726,2520350-2520663,2520931-2521110 27 9.1
>02_03_0340 +
17946133-17946136,17946207-17946342,17946428-17946584,
17947330-17947458
Length = 141
Score = 86.2 bits (204), Expect = 1e-17
Identities = 56/139 (40%), Positives = 73/139 (52%), Gaps = 18/139 (12%)
Frame = -1
Query: 407 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 228
M ++K ELR K+ L+ LRVAKVTGG +KLSKI+VVR +IARV V
Sbjct: 1 MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60
Query: 227 YHQKMKVNLRXXXXXXXXKPLDLRAKKTRAMRKALTKH------------------EAKI 102
QK + LR PLDLR KKTRA+R+ LTKH + +
Sbjct: 61 ISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLCYTCIRLLTFSMVAISQLSL 120
Query: 101 KTRKEIRKKSLFPPRVYAV 45
KT +E +++ FP R YA+
Sbjct: 121 KTEREKKREKYFPMRKYAI 139
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 54.8 bits (126), Expect = 4e-08
Identities = 41/106 (38%), Positives = 56/106 (52%)
Frame = -1
Query: 419 VTVKMGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIAR 240
VTV M ++K LR ++ L+ LRVA+VTGG +KLS I+V R A+
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIKV-RTALRE 162
Query: 239 VYIVYHQKMKVNLRXXXXXXXXKPLDLRAKKTRAMRKALTKHEAKI 102
Y +K K +L PLDLR KKT A+R+ LTKH+ +
Sbjct: 163 AY----KKKKKSL---------LPLDLRPKKTCAIRRRLTKHQGML 195
>01_07_0359 -
43042675-43042758,43042956-43043024,43043099-43043159,
43043260-43043768,43044545-43045153,43045697-43045972,
43046581-43046769,43047006-43047116,43047621-43047908,
43047990-43048041,43048648-43048824,43049249-43049314,
43049675-43049929,43050071-43050577,43050807-43050886,
43050974-43051207
Length = 1188
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = -3
Query: 471 STIDLRENILLDLAVGERDRQ 409
STID+ N+L+D A+ ERDR+
Sbjct: 85 STIDMAYNVLIDHALAERDRR 105
>03_05_0490 + 24866418-24867008
Length = 196
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 513 TALDSAPITKAAAMSTIDLRENILLDLAVGERDRQNGQSE 394
TA +AP++ A A + E ++LD A GE D + G+ E
Sbjct: 34 TADAAAPVSDAGAAVAAEEGETVILDAAAGEGDAE-GEEE 72
>12_01_0152 - 1168928-1169377
Length = 149
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 305 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 216
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>11_01_0155 - 1287003-1287452
Length = 149
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 305 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 216
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>05_03_0042 -
7675244-7675846,7675946-7676101,7676444-7676511,
7680128-7680383
Length = 360
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 413 RSRSPTAKSSKMFSLKSIVLIAAAFVIGAESSAVAA 520
RS S AK++ +L +V+ AAA + AE++AVAA
Sbjct: 4 RSSSSPAKTTTTLALL-LVVAAAAAAVAAEAAAVAA 38
>01_01_0308 + 2519384-2519726,2520350-2520663,2520931-2521110
Length = 278
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = -3
Query: 483 AAAMSTIDLRENILLDLAVGERDRQNGQSEVFRIKDKR*KGAIQTA*GAKDRINKSSGC* 304
AA++S ++ RE+ GERD++N + ++FR+ T G + R +++G
Sbjct: 197 AASVSALEKREDWAASSG-GERDKRNREGDLFRLL------CSFTLKGRRTRGGETNG-- 247
Query: 303 SYWWS 289
+ WWS
Sbjct: 248 TVWWS 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,690,035
Number of Sequences: 37544
Number of extensions: 169942
Number of successful extensions: 444
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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