Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313B06f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)        102   2e-22
SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_25206| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)                        27   9.4  

>SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)
          Length = 131

 Score =  102 bits (244), Expect = 2e-22
 Identities = 61/119 (51%), Positives = 71/119 (59%)
 Frame = -1

Query: 401 KVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYH 222
           KVK  ELR K               L+ LRVAKVTGG ASKLSKI+VVRK++ARV  V  
Sbjct: 11  KVKAHELRGKKKDELLKQLDELKTELSQLRVAKVTGGAASKLSKIKVVRKSVARVLTVVS 70

Query: 221 QKMKVNLRXXXXXXXXKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAV 45
           Q  + NLR         PLDLR K TRAMR++LTK EA  KT K+ +K + F  R YAV
Sbjct: 71  QTQRDNLRKFYRKKKYLPLDLRPKLTRAMRRSLTKKEASSKTLKQQKKLAHFSLRKYAV 129


>SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1855

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 430 CQIKQDVLSQIYRTHRCCLCN 492
           C + +D + Q+++ H C LCN
Sbjct: 919 CSVSEDNIMQVWQMHPCGLCN 939


>SB_25206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 492 ITKAAAMSTIDLRENILLDLAVGERDRQNGQSEVFRIKD 376
           +T+A  +ST DLR    L   V E ++  GQ+  F I D
Sbjct: 13  LTRALTLSTADLRFTDYLVQHVTEYNKSGGQTVPFSISD 51


>SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 726

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 55  TLGGKRDFFLISFLVLIFASCLVRALRIARVFLALKS 165
           TL G R F       L++ S LV+  RIAR+F   KS
Sbjct: 511 TLCGIRRFGTGISFCLLYTSLLVKTNRIARIFSGTKS 547


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,343,878
Number of Sequences: 59808
Number of extensions: 202512
Number of successful extensions: 461
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)