Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313B06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.62 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   7.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   7.7  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 225 IHNVNTCDSFSYNTDLGQFRSNSTSNF 305
           IHN N  ++ +YN +   + +N+ +N+
Sbjct: 323 IHNNNNYNNNNYNNNYNNYNNNNYNNY 349


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +1

Query: 73  DFFLISFLVLIFASCLVRALRIARVFLALKSK 168
           DF + S L   +  C++       +F AL+++
Sbjct: 342 DFIIYSSLSSFYIPCIIMVFLYYNIFKALRNR 373


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 514 DCTRFSSNYKGSSDEYDR 461
           DC+   S YK + D++DR
Sbjct: 121 DCSGIVSAYKIAIDKFDR 138


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 424 SHCQIKQDVLSQIYRT 471
           SHC + Q+   QIY T
Sbjct: 192 SHCVVCQNFFYQIYAT 207


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 514 DCTRFSSNYKGSSDEYDR 461
           DC+   S YK + D++DR
Sbjct: 121 DCSGIVSAYKIAIDKFDR 138


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 514 DCTRFSSNYKGSSDEYDR 461
           DC++  S +K + D++DR
Sbjct: 118 DCSKIVSAFKIAIDKFDR 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,817
Number of Sequences: 438
Number of extensions: 1749
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)