Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS313B06f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D) ribo...   107   4e-24
At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) vari...   107   4e-24
At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) vari...   107   4e-24
At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)           107   6e-24
At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) simi...   106   8e-24
At5g45720.1 68418.m05621 hypothetical protein                          27   5.8  

>At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D)
           ribosomal protein L35- cytosolic, Arabidopsis thaliana,
           PIR:T00549
          Length = 123

 Score =  107 bits (257), Expect = 4e-24
 Identities = 59/121 (48%), Positives = 73/121 (60%)
 Frame = -1

Query: 407 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 228
           M ++K  ELR K               L  LRVAKVTGG  +KLSKI+VVRK+IA+V  V
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 227 YHQKMKVNLRXXXXXXXXKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 48
             QK K  LR         PLDLR KKTRA+R+ LTKH+A +KT +E +K+  FP R YA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120

Query: 47  V 45
           +
Sbjct: 121 I 121


>At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) various
           ribosomal L35 proteins
          Length = 123

 Score =  107 bits (257), Expect = 4e-24
 Identities = 59/121 (48%), Positives = 73/121 (60%)
 Frame = -1

Query: 407 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 228
           M ++K  ELR K               L +LRVAKVTGG  +KLSKI+VVRK+IA+V  V
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 227 YHQKMKVNLRXXXXXXXXKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 48
             QK K  LR         PLDLR KKTRA+R+ LTKH+A +KT +E +K   FP R YA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 47  V 45
           +
Sbjct: 121 I 121


>At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) various
           ribosomal L35 proteins
          Length = 123

 Score =  107 bits (257), Expect = 4e-24
 Identities = 59/121 (48%), Positives = 73/121 (60%)
 Frame = -1

Query: 407 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 228
           M ++K  ELR K               L +LRVAKVTGG  +KLSKI+VVRK+IA+V  V
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 227 YHQKMKVNLRXXXXXXXXKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 48
             QK K  LR         PLDLR KKTRA+R+ LTKH+A +KT +E +K   FP R YA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 47  V 45
           +
Sbjct: 121 I 121


>At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)
          Length = 123

 Score =  107 bits (256), Expect = 6e-24
 Identities = 59/121 (48%), Positives = 73/121 (60%)
 Frame = -1

Query: 407 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 228
           M ++K  ELR K               L  LRVAKVTGG  +KLSKI+VVRK+IA+V  V
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 227 YHQKMKVNLRXXXXXXXXKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 48
             QK K  LR         PLDLR KKTRA+R+ LTKH+A +KT +E +K+  FP R YA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 47  V 45
           +
Sbjct: 121 I 121


>At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) similar
           to 60S ribosomal protein L35 GB:AAC27830
          Length = 123

 Score =  106 bits (255), Expect = 8e-24
 Identities = 59/121 (48%), Positives = 73/121 (60%)
 Frame = -1

Query: 407 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 228
           M ++K  ELR K               L  LRVAKVTGG  +KLSKI+VVRK+IA+V  V
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 227 YHQKMKVNLRXXXXXXXXKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 48
             QK K  LR         PLDLR KKTRA+R+ LTKH+A +KT +E +K+  FP R YA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 47  V 45
           +
Sbjct: 121 I 121


>At5g45720.1 68418.m05621 hypothetical protein
          Length = 900

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 519 AATALDSAPIT-KAAAMSTIDLRENILLDLAVGERDRQNGQSEVFRIKD 376
           A  A+  +P+T +    S  DL  + L  L+ GER R++G+SE+  + D
Sbjct: 789 AFEAVLGSPVTLEMRTESKKDLGFSSLQGLSNGERFRESGRSEIVEVAD 837


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,612,219
Number of Sequences: 28952
Number of extensions: 141043
Number of successful extensions: 378
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)